get_cols: Get columns from an RNA-seq dataset

In richysix/rnaseqtools: Helpers for dealing with our RNA-seq output

Get columns from an RNA-seq dataset

Description

get_cols is a helper function to get either counts, normalised counts or tpm from an RNA-seq data frame

Usage

get_cols(data, samples = NULL, cols = ".counts?$")

Arguments

data	df rna-seq data to get columns from
samples	df a samples df to subset the data to
cols	Str to use as a search term

Value

data.frame If there no matching columns in the supplied data frame then NULL is returned

Examples

counts <- get_cols(data, samples, ".counts?$")
norm_counts <- get_cols(data, samples, ".normalised.counts?$")
tpm <- get_cols(data, samples, ".tpms?$")

richysix/rnaseqtools documentation built on Jan. 26, 2025, 10:14 a.m.