write_NIRparams: Write NIR parameters file to disk

In ricoperdiz/NIRtools: Tools to deal with near infrared (NIR) spectrocospy data

Write NIR parameters file to disk

Description

Write NIR parameters file to disk

Usage

write_NIRparams(
  file = "",
  wd = ".",
  surface = "",
  reads = "",
  nir_variables = "",
  subset_file = "",
  individual_id = "",
  individual_list = NULL,
  surface_id = "",
  group_id = "",
  nir_id = "X"
)

Arguments

file	Dataset name.
wd	Location of working directory. If not provided, current working directory will be used one.
surface	Which leaf surface (abaxial, adaxial, both).
reads	Do all the reads will be taken into account (all, mean)?
nir_variables	Which NIR variables will be used (all, subset).
subset_file	Location of NIR variable subset file, in case option selected in 'nir_variables' was 'subset'.
individual_id	Which variable name corresponds to the individual?
individual_list	Location of a file containing list of specimens to subset data when building datasets with 'build_NIRdataset' function.
surface_id	Which variable name corresponds to the leaf surface?
group_id	Which variable name corresponds to the group category?
nir_id	A string that can be used to grep column names containing NIR data. Default value is ''X', which precedes all columns with NIR data.

Value

A message that indicates the file has been saved to disk.

Examples

## Not run: 
write_NIRparams(file = "teste", wd = ".",
 reads = "mean", surface = "abaxial",
  nir_variables = "all", surface_id = "face",
   individual_id = "especimenid",
   individual_list = NULL, group_id = "SP1",
    nir_id = "X")
read_NIRparams("teste-NIR.txt")
readLines("teste-NIR.txt")

## End(Not run)

ricoperdiz/NIRtools documentation built on Oct. 24, 2023, 1:30 a.m.