scTGIF-package: Cell type annotation for unannotated single-cell RNA-Seq data
In rikenbit/scTGIF: Cell type annotation for unannotated single-cell RNA-Seq data
scTGIF-package R Documentation
Cell type annotation for unannotated single-cell RNA-Seq data
Description
scTGIF connects the cells and the related gene functions without
cell type label.
Details
The DESCRIPTION file:
This package was not yet installed at build time.
Index: This package was not yet installed at build time.
calcTGIF function calculates what kind of
cellular patterns and functional patterns are contained
in single-cell RNA-seq data and reportTGIF
function generates report of analytic result.
The algorithm is based on joint NMF, which is implemented in nnTensor package.
Author(s)
NA
Maintainer: NA
References
Dominic Grun, Anna Lyubimova, Lennart Kester, Kay Wiebrands,
Onur Basak, Nobuo Sasaki, Hans Clevers, Alexander van Oudenaarden
(2015) Single-cell messenger RNA sequencing reveals rare
intestinal cell types. Nature, 525: 251-255
rikenbit/scTGIF documentation built on Jan. 14, 2023, 4:18 a.m.
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| scTGIF-package | R Documentation |
Cell type annotation for unannotated single-cell RNA-Seq data
Description
scTGIF connects the cells and the related gene functions without cell type label.
Details
The DESCRIPTION file:
This package was not yet installed at build time.
Index: This package was not yet installed at build time.
calcTGIF function calculates what kind of
cellular patterns and functional patterns are contained
in single-cell RNA-seq data and reportTGIF
function generates report of analytic result.
The algorithm is based on joint NMF, which is implemented in nnTensor package.
Author(s)
NA
Maintainer: NA
References
Dominic Grun, Anna Lyubimova, Lennart Kester, Kay Wiebrands, Onur Basak, Nobuo Sasaki, Hans Clevers, Alexander van Oudenaarden (2015) Single-cell messenger RNA sequencing reveals rare intestinal cell types. Nature, 525: 251-255
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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