API for rivas-lab/snpnet
snpnet: Efficient Lasso Solver for Large SNP Data
| Global functions | |
|---|---|
| FID_IID_from_rownames | Man page Source code |
| FID_IID_to_rownames | Man page Source code |
| KKT.check.single | Source code |
| build_eval_df | Source code |
| cat_or_zcat | Man page Source code |
| compose_regression_formula_str | Man page Source code |
| computeLambdas | Source code |
| compute_OR | Source code |
| compute_covar_score | Source code |
| compute_covariate_score | Source code |
| compute_covariate_score_across_splits | Source code |
| compute_matrix_product | Man page Source code |
| compute_mean | Source code |
| compute_phe_score_df | Source code |
| compute_summary_OR_df | Source code |
| compute_summary_df | Source code |
| compute_summary_mean_df | Source code |
| config_params_data_type | Man page Source code |
| count_n_per_split | Man page Source code |
| coxgrad | Source code |
| eval_AUC_CI | Man page Source code |
| eval_CI | Man page Source code |
| eval_CI_across_splits | Source code |
| eval_performance | Source code |
| eval_r2_CI | Man page Source code |
| filter_by_percentile_and_count_phe | Source code |
| fit_covar_model | Source code |
| fit_glm | Man page Source code |
| fit_glm_across_splits | Man page Source code |
| fit_to_df | Man page Source code |
| get_ID_ALTs | Man page Source code |
| glm_fit_to_r2 | Man page Source code |
| inferFamily | Source code |
| parse_covariates | Man page Source code |
| perform_eval | Source code |
| plot_PRS_bin_vs_OR | Source code |
| plot_PRS_bin_vs_phe | Source code |
| plot_PRS_binomial | Man page Source code |
| plot_PRS_vs_phe | Man page Source code |
| predict_snpnet | Man page Source code |
| prepareFeatures | Source code |
| readIDsFromPsam | Source code |
| readPheMaster | Man page Source code |
| readPlinkKeepFile | Source code |
| read_BETAs | Source code |
| read_PRS | Source code |
| read_config_from_file | Man page Source code |
| read_lambda_sequence_from_RData_file | Man page Source code |
| read_phenotype_file | Man page Source code |
| read_predicted_scores | Source code |
| read_sscore_file | Man page Source code |
| recode_pheno_values | Man page Source code |
| save_BETA | Man page Source code |
| snpnet | Man page Source code |
| snpnet_fit_to_df | Man page Source code |
| snpnet_refit | Source code |
| split_list_str | Man page Source code |
| split_named_list_str | Man page Source code |
| update_split_column_for_refit | Man page Source code |
