plot_PRS_vs_phe: generate a 2d heatmap plot comparing the PRS (Z-score if...

In rivas-lab/snpnet: snpnet: Efficient Lasso Solver for Large SNP Data

Description

generate a 2d heatmap plot comparing the PRS (Z-score if geno_z == TRUE) vs phenotype.

Usage

plot_PRS_vs_phe(
  plot_df,
  plot_bin2d_x = NULL,
  plot_bin2d_y = NULL,
  geno_score_col = "geno_score",
  phe_col = "phe",
  geno_z = TRUE
)

Arguments

plot_df	PRS and phenotype columns for (typically test) set of individuals
plot_bin2d_x	size of the x-axis grid in 2d heatmap
plot_bin2d_y	size of the y-axis grid in 2d heatmap
geno_score_col	column name of the score in plot_df
phe_col	column name of the phenotype data in plot_df
geno_z	whether to take the Z-score transformation of the score

rivas-lab/snpnet documentation built on Dec. 14, 2021, 3:22 a.m.