save_BETA: save the regression coefficients (betas) into file(s).

In rivas-lab/snpnet: snpnet: Efficient Lasso Solver for Large SNP Data

Description

We use up to 2 files corresponding to the betas for genetic variants as well as the ones for covariates (optional).

Usage

save_BETA(df, out.file.head, pvar, covariates = NULL, verbose = FALSE)

Arguments

df	a dataframe containing beta values
out.file.head	a prefix of the output file name
pvar	a path to pvar file containing the list of variants
covariates	a list of covariates
verbose	A boolean variable indicating whether we should dump logs

Details

For the genetic variants, we recover the information stored in the pvar[.zst] file and sort the results based on CHROM and POS columns.

rivas-lab/snpnet documentation built on Dec. 14, 2021, 3:22 a.m.