Man pages for rjbgoudie/parental
Light-weight graph package

add.undirected.backend	(Internal) Add undirected edge to a 'bnlearn' object.
add.undirected.edge	Add undirected edge to a 'bnlearn' object.
as.adjacency	Convert an object to an adjacency matrix.
as.adjacency.parental	Convert a object of class 'parental' to an adjacency matrix.
as.bn	Convert an object to a bn.
as.bn.character	Convert a character vector to a 'bn'.
as.bn.graphNEL	Convert a graphNEL object to a 'bn' object.
as.bn.matrix	Convert a matrix to a 'bn'.
as.bn.pcAlgo	Coerce pcAlgo object to a bn.
as.bvs	Convert objects to a bvs.
as.bvs.bvsresponse	Convert 'bvsresponse' to 'bvs'.
as.bvsresponse	Convert an object a 'bvsresponse' object.
as.bvsresponse.bvs	Convert a 'bvs' object to a 'bvsresponse' object.
as.bvsresponse.character	Convert character vector to 'bvsresponse'.
as.character.bvsresponse	Convert 'bvsresponse' to character vector.
as.character.bvsresponse.list	Convert 'bvsresponse list' to character vector.
as.character.parental	Convert a parental object to a character vector.
as.character.parental.list	Convert a 'parental list' to a character vector.
as.cpdag	Convert an object to a CPDAG.
as.cpdag0	Convert an object to a CPDAG.
as.cpdag0.bn	Convert 'bn' to CPDAG.
as.cpdag0.bn.list	Convert 'bn list' to CPDAG (old version).
as.cpdag0.bnpostmcmc.list	Convert 'bnpostmcmc list' to CPDAG (old version).
as.cpdag.bn	Convert a bn to a CPDAG2 (?).
as.cpdag.bn.list	Convert 'bn list' to CPDAGs.
as.cpdag.bnpostmcmc.list	Convert 'bnpostmcmc list' to CPDAGs.
as.graph	Convert an object to a graph.
as.graph.parental	Convert a 'parental' object to a 'graphNEL' object.
as.parental	Convert an object to a parental object.
as.parental.bn	Convert a 'bn' to a 'parental'.
as.parental.character	Convert a character string to a parental.
as.parental.graphNEL	Convert a graphNEL object to a 'parental' object.
as.parental.matrix	Convert a variety of matrix objects to 'parental' objects.
as.parental.pcAlgo	Coerce pcAlgo object to a bn.
barchart.parental	Barchart of a graph.
bn	Constructor function for a 'bn' object.
bnlearn2parental	Conversion from 'bnlearn' object.
bn.list	Constructor function for a 'bn list'.
bvs	Constructor function for a 'bvs' object.
bvsresponse	Construct 'bvsreponse'.
bvsresponse.list	Constructor function for a 'bvsresponse list' object.
c.bn.list	Concatenates 'bn list'.
checkAcyclic	Acyclicity testing.
combn2	(Fast, simple) Generate All Combinations of n Elements, Taken...
combn3	(C version) Generate All Combinations of n Elements, Taken m...
complete	Return a complete graph.
convertToEnlargedCoordinates	Expand coordinates.
coordinatesBetweenRectangles	Calculate coordinates of line between bounding boxes.
c.parental.list	Concatenates 'parental list'.
cptBinary	Create a binary Conditional Probability Table.
distance	Calculate distance between two points.
drawDetails.lattice	drawDetails for lattice plots.
empty	Return empty graph.
enumerateBNSpace	Enumerate the space of BNs.
enumerateBVSSpace	Enumerate the space of BVSs.
enumerateConfSpace	Enumerate the space of Confounder Graphs.
enumerateParents	Enumerate all possible parents.
expected.sample	Undocumented.
filterCyclic	Filter cyclic graphs.
getbnl	Extract parts of a 'bn list'.
getbvsrl	Extract parts of a 'bvsresponse list'.
getChildren	Children lists.
getpl	Extract parts of a 'parental list'.
grobNodeLevelPlot	Levelplot node grob.
grobNodeLevelPlotDefaultTheme	Return the default theme.
grobNodeLevelPlotSize	Levelplot size for a node.
grobNodeName	Return a grob for node "node" when the name of the node is...
grobNodeNameSize	Return the size of node when the name of the node is plotted.
grplot	Plot a graph.
grplot.bvsresponse	Plot a 'bvsresponse' graph.
grplot.parental	Plot a graph.
grplot.parental.list	Plot a 'parental list'.
indegrees	Indegrees.
indegrees.parental	Indegrees.
is.element2	Undocumented.
is.valid	Check validity.
is.valid.bn	Check validity.
is.valid.bvs	Check validity.
is.valid.bvsresponse	Checks validity.
is.valid.parental	Check validity.
is.wholenumber	Tests for whole numbers.
latticeGrob	Convert a lattice object to a grob.
lpunion	Undocumented.
makeNonVStructuresUndirected	Undocumented.
marginal.probs	Undocumented.
maximallyOrientEdges	Undocumented.
maximallyOrientEdges.matrix	Undocumented.
maximallyOrientEdges.parental	Undocumented.
maximallyOrientEdgesSlow	Undocumented.
maximallyOrientEdgesSlow.matrix	Maximally orient edges.
maximallyOrientEdgesSlow.parental	Undocumented.
nEdges	Number of edges.
neighbourhoodSize	Neighbourhood size.
nNodes	Number of nodes.
nNodes.parental	Number of nodes/vertices.
nodeLevelplot	Multi-page plot of nodeLevelPlots.
notdiag	Retrieve off-diagonal elements.
numberOfMovesBetweenIgnoringCycles	Number of moves between graphs.
package-parental	The parental package.
panel.parental	Panel function for ploting a parental graph.
parental	Constructor function for a 'parental' object.
parental2bnlearn	Conversion to 'bnlearn'.
parental.list	Constructor function for a 'parental list' object.
parents	Parents.
paste.and.draw2	Undocumented.
pdag2alldags	Undocumented.
pdag2alldags.matrix	Undocumented.
pdag2alldags.parental	Undocumented.
pdag2alldagsSlow	Undocumented.
pdag2alldagsSlow.matrix	Undocumented.
pdag2alldagsSlow.parental	Undocumented.
pintersect	Undocumented.
pltabulate	Tabulate a parental list.
prepanel.parental	Pre-panel function for plotting parental objects.
print.bn	Prints 'bn'.
print.bvsresponse	Prints 'bvsresponse'.
print.parental	Prints 'parental'.
print.parental.list	Prints 'parental list'.
psetdiff	Undocumented.
ptablesDirichlet	Draw ptables from product Dirichlet distribution.
punion	Undocumented.
rdirichlet	Sampling from Dirichlet distribution.
recurse_unoriented_edge	Recurse unoriented edge.
recurse_unoriented_edgeSlow	Recurse unoriented edge (slow).
renameNodes	Rename nodes.
renameNodes.parental.list	Rename nodes.
route	Unknown.
routes	Get routes matrix for a 'bn'.
routesAddEdge	Update a routes matrix (edge addition).
routesRemoveEdge	Update a routes matrix (edge removal).
sampleBN	Draw a 'random' BN.
sampleBN2	Draw a 'random' BN.
seemsPretty	Heuristic test for pretty-printing.
setdiff2	A dual-direction, fast (and dangerous!) version of setdiff.
simulate.bn	Draw data according to a Bayesian Network.
strip.custom2	Undocumented.
strip.default2	Undocumented.
toCartesian	Convert polar coordinates to Cartesian.
toPolar	Convert cartesian coordinates to polars.
topologicallyOrder	Topological ordering.
useOuterStrips2	Put Strips on the Boundary of a Lattice Display.
which2	Undocumented.
whichVStructure	Find V Structure.
whichVStructurePlot	Undocumented.