mukherjeeBioinformaticsPrior: Mukherjee Bioinformatics prior.

Description Usage Arguments Details Value

View source: R/priors.R

Description

Compute prior score P(M) for a 'bvsresponse'. The prior is flat from 0 parents to k0 parents, then exponentially(lambda) decreaasing to kmax, at which point it becomes zero.

Usage

1
  mukherjeeBioinformaticsPrior(x, k0, kmax, lambda)

Arguments

x

A 'bvsresponse' object

k0

The level below which the prior stops being flat

kmax

The level above which the prior is zero

lambda

The exponential decay parameter

Details

The prior originates in Mukherjee el al. (2009), and is equation (8) in section 3.1.3.

Mukherjee et al. Sparse combinatorial inference with an application in cancer biology. Bioinformatics (2009) vol. 25 (2) pp. 265

Value

The prior score for the 'bvsresponse' x


rjbgoudie/structmcmc documentation built on Nov. 3, 2020, 3:41 a.m.