Hapi-package: Hapi is a novel easy-to-use package that only requires 3 to 5...
In rli012/Hapi: Inference of Chromosome-length Haplotypes using Genomic Data of Single Gamete Cells
Hapi-package R Documentation
Hapi is a novel easy-to-use package that only requires 3 to 5 gametes
to reconstruct accurate and high-resolution haplotypes of an individual.
The gamete genotype data may be generated from various platforms including
genotyping arrays and next generation sequencing even with low-coverage.
Hapi simply takes genotype data of known hetSNPs in single gamete cells
as input and report the high-resolution haplotypes as well as confidence
level of each phased hetSNPs. The package also includes a module allowing
downstream analyses and visualization of crossovers in the gametes.
Description
Hapi is a novel easy-to-use package that only requires 3 to 5 gametes
to reconstruct accurate and high-resolution haplotypes of an individual.
The gamete genotype data may be generated from various platforms including
genotyping arrays and next generation sequencing even with low-coverage.
Hapi simply takes genotype data of known hetSNPs in single gamete cells
as input and report the high-resolution haplotypes as well as confidence
level of each phased hetSNPs. The package also includes a module allowing
downstream analyses and visualization of crossovers in the gametes.
rli012/Hapi documentation built on April 4, 2022, 8:39 p.m.
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| Hapi-package | R Documentation |
Hapi is a novel easy-to-use package that only requires 3 to 5 gametes to reconstruct accurate and high-resolution haplotypes of an individual. The gamete genotype data may be generated from various platforms including genotyping arrays and next generation sequencing even with low-coverage. Hapi simply takes genotype data of known hetSNPs in single gamete cells as input and report the high-resolution haplotypes as well as confidence level of each phased hetSNPs. The package also includes a module allowing downstream analyses and visualization of crossovers in the gametes.
Description
Hapi is a novel easy-to-use package that only requires 3 to 5 gametes to reconstruct accurate and high-resolution haplotypes of an individual. The gamete genotype data may be generated from various platforms including genotyping arrays and next generation sequencing even with low-coverage. Hapi simply takes genotype data of known hetSNPs in single gamete cells as input and report the high-resolution haplotypes as well as confidence level of each phased hetSNPs. The package also includes a module allowing downstream analyses and visualization of crossovers in the gametes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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