binned_function: calculate binned values
In rmflight/fmcorrelationbreastcaparp1: Functions for calculating the correlations in PARP1 nucleosome data in breast cancer cell lines
Description
Usage
Arguments
Details
Value
Description
given a set of genomic bins and an RLE-list object, return value
Usage
1
binned_function(bins, numvar, binfun = "mean", mcolname = "avg")
Arguments
bins
a GRanges object representing genomic bins
numvar
a named RleList object representing numerical variable along the genome
binfun
character string of the function to apply
mcolname
the name of the metadata column containing the binned value of the object
Details
Adapted from documentation of tileGenome
Value
bins with the mcolname containing the binned value
rmflight/fmcorrelationbreastcaparp1 documentation built on May 27, 2019, 9:31 a.m.
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Description Usage Arguments Details Value
Description
given a set of genomic bins and an RLE-list object, return value
Usage
1 | binned_function(bins, numvar, binfun = "mean", mcolname = "avg")
|
Arguments
bins |
a |
numvar |
a named |
binfun |
character string of the function to apply |
mcolname |
the name of the metadata column containing the binned value of the object |
Details
Adapted from documentation of tileGenome
Value
bins with the mcolname containing the binned value
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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