vote_categories_classes: vote on categories and classes

In rmflight/metabolomicsUtilities: Provides useful functions for working with metabolomics data

vote on categories and classes

Description

Given a data.frame of categories, classes, and EMFs, does voting by the EMF first on the Categories, and then trims to those Classes that are part of the original Category, and does voting on the remaining Classes.

Usage

vote_categories_classes(
  categories_classes,
  emfs = "emf",
  categories = "Categories",
  classes = "Classes",
  return_opts = "max",
  vote_threshold = 2/3 * 100,
  exclude_votes = c("not_lipid", "unclassifiable", as.character(NA),
    "not_lipid or not_classified"),
  debug = FALSE
)

Arguments

categories_classes	data.frame of information
emfs	which column is EMFs
categories	which column is categories
classes	which column has classes
return_opts	what to return ('max', 'all', 'single', 'multiple')
vote_threshold	what is the vote threshold for 'single'?
exclude_votes	which categories should be excluded?

Value

data.frame

rmflight/metabolomicsUtilities documentation built on Oct. 28, 2023, 6:41 p.m.