similarity_reorder: cluster and reorder

In rmflight/visualizationQualityControl: Development of visualization methods for quality control

cluster and reorder

Description

given a matrix (maybe a distance matrix), cluster and then re-order using dendsort.

Usage

similarity_reorder(
  similarity_matrix,
  matrix_indices = NULL,
  transform = "none",
  hclust_method = "complete",
  dendsort_type = "min"
)

Arguments

similarity_matrix	matrix of similarities
matrix_indices	indices to reorder
transform	should a transformation be applied to the data first
hclust_method	which method for clustering should be used?
dendsort_type	how should the reordering be done? (default is "min")

Value

a dendrogram object. To get the order use order.dendogram.

rmflight/visualizationQualityControl documentation built on Feb. 18, 2024, 9:46 a.m.