summarize_data: summarize data

In rmflight/visualizationQualityControl: Development of visualization methods for quality control

summarize data

Description

summarizes a matrix or data.frame, where columns are samples and rows are features

Usage

summarize_data(
  in_data,
  sample_classes = NULL,
  avg_function = mean,
  log_transform = FALSE,
  remove_missing = NA
)

Arguments

in_data	matrix or data.frame
sample_classes	which samples are in which class
avg_function	which function to use for summary
log_transform	apply a log-transform to the mean
remove_missing	remove missing values before summarizing

Value

data.frame

rmflight/visualizationQualityControl documentation built on Feb. 18, 2024, 9:46 a.m.