get_female_exposed_to_male_days: Get number of days females were exposed to fertile males.
In rmsharp/animalr: Provides Useful Functions for the SNPRC Animal Database

Get number of days females were exposed to fertile males.

get_female_exposed_to_male_days(
  conn,
  arc_species_code = "PC",
  min_date = "01-01-2014",
  max_date = strftime(Sys.Date(), format = "%m-%d-%Y"),
  male_age = 48,
  female_age = 42,
  gestation_length = 183
)

`conn`	database connection object
`arc_species_code`	optional character vector of length 1 having the two character arc_species_code defined by the IACUC. Defaults to "PC".
`min_date`	optional character vector of length 1 having the first date to be included in the time frame of interest. Defaults to "01-01-2014". Should be formatted as "%m-%d-%Y".
`max_date`	optional character vector of length 1 having the last date to be included in the time frame of interest. Defaults to current date. Should be formatted as "%m-%d-%Y".
`male_age`	integer value in months that indicates the minimum age the male must be on each day with a female.
`female_age`	integer value in months that indicates the minumum age the female must be on each day with a male.
`gestation_length`	integer value indicating the gestation length in days for the species. Animals exposed to the male less than the gestational length are not included. This can be set to 0 to include all females exposed to fertile males for any length of time. Defaults to 183.

dataframe with id (female Id), days (number of days exposed), current_location, min_date (first date of exposure), and max_date (last date of exposure).

Males having an attribute of "vasectomized" are not included.

rmsharp/animalr documentation built on March 10, 2021, 1:12 p.m.