rnabioco/AVIDtools: A collection of single-cell V(D)J tools

djvdj provides a single-cell V(D)J analysis workflow that integrates with popular single-cell data structures. This includes the ability to cluster CDR3 sequences and to quantify repertoire diversity, repertoire similarity, and gene segment usage. Tools are also provided to generate a variety of visualizations including rarefaction curves, circos plots and UMAP projections.

Getting started

Package details

Bioconductor views RNASeq Sequencing SingleCell Software
LicenseMIT + file LICENSE
URL https://rnabioco.github.io/djvdj/ https://github.com/rnabioco/djvdj/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
rnabioco/AVIDtools documentation built on Oct. 28, 2023, 10:23 a.m.