djvdj-package: djvdj: A collection of single-cell V(D)J tools

djvdj-packageR Documentation

djvdj: A collection of single-cell V(D)J tools

Description

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djvdj provides a single-cell V(D)J analysis workflow that integrates with popular single-cell data structures. This includes the ability to cluster CDR3 sequences and to quantify repertoire diversity, repertoire similarity, and gene segment usage. Tools are also provided to generate a variety of visualizations including rarefaction curves, circos plots and UMAP projections.

Author(s)

Maintainer: Ryan Sheridan ryan.sheridan@cuanschutz.edu (ORCID)

Other contributors:

See Also

Useful links:


rnabioco/AVIDtools documentation built on Oct. 28, 2023, 10:23 a.m.