djvdj-package: djvdj: A collection of single-cell V(D)J tools

In rnabioco/AVIDtools: A collection of single-cell V(D)J tools

djvdj: A collection of single-cell V(D)J tools

Description

djvdj provides a single-cell V(D)J analysis workflow that integrates with popular single-cell data structures. This includes the ability to cluster CDR3 sequences and to quantify repertoire diversity, repertoire similarity, and gene segment usage. Tools are also provided to generate a variety of visualizations including rarefaction curves, circos plots and UMAP projections.

Author(s)

Maintainer: Ryan Sheridan [e-mail] (ORCID)

Other contributors:

• Jay Hesselberth [e-mail] [contributor]

• Rui Fu [e-mail] [contributor]

• Kent Riemondy [e-mail] [contributor]

• RNA Bioscience Initiative [funder]

See Also

Useful links:

• https://rnabioco.github.io/djvdj/

• https://github.com/rnabioco/djvdj/

• Report bugs at https://github.com/rnabioco/djvdj/issues

rnabioco/AVIDtools documentation built on Oct. 28, 2023, 10:23 a.m.