calc_diversity | Calculate repertoire diversity |
calc_frequency | Calculate frequency of cell groups present in object |
calc_gene_pairs | Calculate paired usage of V(D)J segments across chains |
calc_gene_usage | Calculate V(D)J segment usage |
calc_mds | Perform multidimensional scaling |
calc_similarity | Calculate repertoire similarity |
cluster_sequences | Cluster cells based on CDR3 sequences |
define_clonotypes | Define clonotypes based on V(D)J data |
djvdj-package | djvdj: A collection of single-cell V(D)J tools |
djvdj_theme | Theme for djvdj plotting functions |
fetch_vdj | Fetch V(D)J data from object |
filter_vdj | Filter V(D)J data in object |
import_vdj | Import V(D)J data |
mutate_meta | Modify object meta.data |
mutate_vdj | Modify V(D)J data in object |
plot_clone_frequency | Plot clonotype frequency |
plot_diversity | Plot repertoire diversity |
plot_frequency | Plot frequency of cell groups present in object |
plot_gene_pairs | Plot paired usage of V(D)J segments across chains |
plot_gene_usage | Plot V(D)J segment usage |
plot_mds | Create MDS plot |
plot_motifs | Plot CDR3 sequence motifs |
plot_numerical | Plot numerical single-cell data |
plot_rarefaction | Plot rarefaction curves |
plot_scatter | Create 2D scatter plot |
plot_similarity | Plot repertoire similarity |
splen_meta | Meta data for downsampled splenocyte data |
summarize_vdj | Summarize V(D)J data for each cell |
tidyeval | Tidy eval helpers |
tiny_sce | A tiny SingleCellExperiment object |
vdj_sce | A tiny SingleCellExperiment object with V(D)J data |
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