ref_marker_select: marker selection from reference matrix

In rnabioco/clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

marker selection from reference matrix

Description

marker selection from reference matrix

Usage

ref_marker_select(mat, cut = 0.5, arrange = TRUE, compto = 1)

Arguments

mat	reference matrix
cut	an expression minimum cutoff
arrange	whether to arrange (lower means better)
compto	compare max expression to the value of next 1 or more

Value

dataframe, with gene, cluster, ratio columns

Examples

ref_marker_select(
    cbmc_ref,
    cut = 2
)

rnabioco/clustifyr documentation built on Sept. 2, 2024, 11:12 p.m.