tx_rates: Transcription rates for ~7000 genes measured across a...

In rnabioco/eda: Practical Biological Data Analysis in R/RStudio

Transcription rates for ~7000 genes measured across a timecourse

Description

Mouse dendritic cells were stimulated with LPS, and timepoints were collected every 15 minutes. Metabolic labeling pulse with 4sU was performed 10 minutes prior to collection. Total RNA and 4sU containing RNA was collected and used to calculate transcription rates.

Usage

tx_rates

Format

matrix with 7872 genes as rows and 13 columns containing transcription rates.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56977

https://www.ncbi.nlm.nih.gov/pubmed/25497548

Examples

tx_rates

rnabioco/eda documentation built on July 12, 2022, 2:17 p.m.