Files in rnabioco/eda
Practical Biological Data Analysis in R/RStudio

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE.md
NAMESPACE
R/data.r R/eda.r R/update-eda.R
R/zzz.r
README.Rmd README.md
_pkgdown.yml
data-raw/brauer-gene-exp.R data-raw/encode-tf-data.r data-raw/hg19-bed.r data-raw/missing-data.R data-raw/mtcars_tbl.r data-raw/qpcr-data-names-384.R data-raw/qpcr-data-names.r data-raw/yeast-prot-prop.R
data/brauer_gene_exp.rda
data/cc_genes.rda
data/drug_resistant2_coldata.rda
data/drug_resistant2_counts.rda
data/drug_resistant_coldata.rda
data/drug_resistant_counts.rda
data/missing.rda
data/missing_ex.rda
data/mtcars_tbl.rda
data/qpcr_data.rda
data/qpcr_names.rda
data/yeast_prot_prop.rda
docs/articles/assignment-1.html
docs/articles/assignment-2.html
docs/articles/assignment-2_files/figure-html/map_glyph-1.png
docs/articles/assignments.html
docs/articles/class-1.html
docs/articles/class-2.html
docs/articles/class-2_files/datatables-binding-0.2/datatables.js
docs/articles/class-2_files/dt-core-1.10.12/css/jquery.dataTables.extra.css
docs/articles/class-2_files/dt-core-1.10.12/css/jquery.dataTables.min.css
docs/articles/class-2_files/dt-core-1.10.12/js/jquery.dataTables.min.js
docs/articles/class-2_files/htmlwidgets-0.9/htmlwidgets.js
docs/articles/class-2_files/jquery-1.12.4/LICENSE.txt
docs/articles/class-2_files/jquery-1.12.4/jquery.min.js
docs/articles/class-3.html
docs/articles/class-4.html
docs/articles/class-5.html
docs/articles/class-6.html
docs/articles/class-7.html
docs/articles/exercises-1.html
docs/articles/exercises-2.html
docs/articles/exercises-3.html
docs/articles/exercises-4.html
docs/articles/exercises-5.html
docs/articles/img/assignment-2-metagene.ai
docs/articles/img/assignment-2-metagene.png
docs/articles/img/assignment-2-metagene_plot.png
docs/articles/img/class-1-data-import.png
docs/articles/img/class-1-plot-1.png
docs/articles/img/class-1-plot_label-1.png
docs/articles/img/class-1-qpcr_plot-1.png
docs/articles/img/class-2-cb-1.png
docs/articles/img/class-2-colnames3-1.png
docs/articles/img/class-2-colnames3-2.png
docs/articles/img/class-2-colnames3-3.png
docs/articles/img/class-2-cowplot-1.png
docs/articles/img/class-2-cowplot-2.png
docs/articles/img/class-2-facets-1.png
docs/articles/img/class-2-figure-1.png
docs/articles/img/class-2-figure_title-1.png
docs/articles/img/class-2-plot_random-1.png
docs/articles/img/class-2-unnamed-chunk-1-1.png
docs/articles/img/class-2-unnamed-chunk-10-1.png
docs/articles/img/class-2-unnamed-chunk-4-1.png
docs/articles/img/class-2-unnamed-chunk-5-1.png
docs/articles/img/class-2-unnamed-chunk-6-1.png
docs/articles/img/class-2-unnamed-chunk-7-1.png
docs/articles/img/class-2-unnamed-chunk-8-1.png
docs/articles/img/class-2-unnamed-chunk-8-2.png
docs/articles/img/class-2-unnamed-chunk-9-1.png
docs/articles/img/class-2-unnamed-chunk-9-2.png
docs/articles/img/class-2-viridis-1.png
docs/articles/img/class-3-brauer_plot-1.png
docs/articles/img/class-4-alignments.jpg
docs/articles/img/class-4-karyotype.png
docs/articles/img/class-4-metagene.png
docs/articles/img/class-6-pca-1.png
docs/articles/img/class-6-se.png
docs/articles/img/class-6-unnamed-chunk-4-1.png
docs/articles/img/class-6-unnamed-chunk-7-1.png
docs/articles/img/class-6-unnamed-chunk-8-1.png
docs/articles/img/class-6-unnamed-chunk-8-2.png
docs/articles/img/class-6-unnamed-chunk-9-1.png
docs/articles/img/class-7-elbow_plot-1.png
docs/articles/img/class-7-filtering-1.png
docs/articles/img/class-7-find_clusters-1.png
docs/articles/img/class-7-outlier_plot-1.png
docs/articles/img/class-7-outlier_plot-2.png
docs/articles/img/class-7-pca_heatmap-1.png
docs/articles/img/class-7-pca_plot-1.png
docs/articles/img/class-7-pkg_data-1.png
docs/articles/img/class-7-plot_genes_feature-1.png
docs/articles/img/class-7-plot_genes_violin-1.png
docs/articles/img/class-7-rename_clusters-1.png
docs/articles/img/class-7-rename_clusters-2.png
docs/articles/img/jackstraw.png
docs/articles/img/plate.jpg
docs/articles/index.html
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/brauer_gene_exp.html
docs/reference/eda.html
docs/reference/index.html
docs/reference/missing_ex.html
docs/reference/mtcars_tbl.html
docs/reference/qpcr_data.html
docs/reference/qpcr_names.html
docs/reference/update_eda.html
docs/reference/yeast_prot_prop.html
eda.Rproj
inst/extdata/hg19_genes.bed.gz
inst/extdata/hg19_genome.txt.gz
inst/extdata/pbmc_gene_bc_matrices/hg19/barcodes.tsv
inst/extdata/pbmc_gene_bc_matrices/hg19/genes.tsv
inst/extdata/pbmc_gene_bc_matrices/hg19/matrix.mtx
inst/extdata/qpcr-data-384.csv
inst/extdata/qpcr-names-384.csv
inst/extdata/wgEncodeRegTfbsClusteredV3.bed.gz
man/brauer_gene_exp.Rd man/eda.Rd man/missing_ex.Rd man/mtcars_tbl.Rd man/qpcr_data.Rd man/qpcr_names.Rd man/update_eda.Rd man/yeast_prot_prop.Rd vignettes/assignment-1.Rmd vignettes/assignment-2.Rmd vignettes/assignments.Rmd vignettes/class-1.Rmd vignettes/class-2.Rmd vignettes/class-3.Rmd vignettes/class-4.Rmd vignettes/class-5.Rmd vignettes/exercises-1.Rmd vignettes/exercises-2.Rmd vignettes/exercises-3.Rmd vignettes/exercises-4.Rmd vignettes/exercises-5.Rmd
vignettes/img/assignment-2-metagene.ai
vignettes/img/assignment-2-metagene.png
vignettes/img/assignment-2-metagene_plot.png
vignettes/img/class-1-data-import.png
vignettes/img/class-1-plot-1.png
vignettes/img/class-1-plot_label-1.png
vignettes/img/class-1-qpcr_plot-1.png
vignettes/img/class-2-cb-1.png
vignettes/img/class-2-cowplot-1.png
vignettes/img/class-2-cowplot-2.png
vignettes/img/class-2-facets-1.png
vignettes/img/class-2-figure-1.png
vignettes/img/class-2-figure_title-1.png
vignettes/img/class-2-plot_random-1.png
vignettes/img/class-2-unnamed-chunk-1-1.png
vignettes/img/class-2-unnamed-chunk-5-1.png
vignettes/img/class-2-unnamed-chunk-6-1.png
vignettes/img/class-2-unnamed-chunk-7-1.png
vignettes/img/class-2-viridis-1.png
vignettes/img/class-3-brauer_plot-1.png
vignettes/img/class-4-alignments.jpg
vignettes/img/class-4-karyotype.png
vignettes/img/class-4-metagene.png
vignettes/img/class-6-pca-1.png
vignettes/img/class-6-se.png
vignettes/img/class-6-unnamed-chunk-4-1.png
vignettes/img/class-6-unnamed-chunk-7-1.png
vignettes/img/class-6-unnamed-chunk-8-1.png
vignettes/img/class-6-unnamed-chunk-8-2.png
vignettes/img/class-6-unnamed-chunk-9-1.png
vignettes/img/class-7-elbow_plot-1.png
vignettes/img/class-7-filtering-1.png
vignettes/img/class-7-find_clusters-1.png
vignettes/img/class-7-outlier_plot-1.png
vignettes/img/class-7-outlier_plot-2.png
vignettes/img/class-7-pca_heatmap-1.png
vignettes/img/class-7-pca_plot-1.png
vignettes/img/class-7-pkg_data-1.png
vignettes/img/class-7-plot_genes_feature-1.png
vignettes/img/class-7-plot_genes_violin-1.png
vignettes/img/class-7-rename_clusters-1.png
vignettes/img/class-7-rename_clusters-2.png
vignettes/img/jackstraw.png
vignettes/img/plate.jpg
rnabioco/eda documentation built on Dec. 17, 2017, 11:10 a.m.