bed_sort: Sort a set of intervals.

In rnabioco/valr: Genome Interval Arithmetic

Sort a set of intervals.

Description

Sort a set of intervals.

Usage

bed_sort(x, by_size = FALSE, by_chrom = FALSE, reverse = FALSE)

Arguments

x	ivl_df
by_size	sort by interval size
by_chrom	sort within chromosome
reverse	reverse sort order

See Also

https://bedtools.readthedocs.io/en/latest/content/tools/sort.html

Examples

x <- tibble::tribble(
  ~chrom, ~start, ~end,
  "chr8", 500,    1000,
  "chr8", 1000,   5000,
  "chr8", 100,    200,
  "chr1", 100,    300,
  "chr1", 100,    200
)

# sort by chrom and start
bed_sort(x)

# reverse sort order
bed_sort(x, reverse = TRUE)

# sort by interval size
bed_sort(x, by_size = TRUE)

# sort by decreasing interval size
bed_sort(x, by_size = TRUE, reverse = TRUE)

# sort by interval size within chrom
bed_sort(x, by_size = TRUE, by_chrom = TRUE)

rnabioco/valr documentation built on April 9, 2024, 3:26 p.m.