sum_score: BLAST sum-score
In robbueck/wisard: Perform wighted interval scheduling on a Genomic Ranges object
Description
Usage
Arguments
Details
Value
View source: R/WIS_functions.R
Description
Caclulated BLAST sum-score from raw-scores and BLAST search
statistics
Usage
1
sum_score(b, metadata)
Arguments
b
Vector of integers or floats.
metadata
BLAST metadata as returned by read_blast_xml.
A data.frame object with one row containing the columns
Statistics_lambda, Statistics_kappa, query_len and Statistics_db.le
Details
This function calculates the BLAST sum-score as described in
Equation 4-17 here:
http://etutorials.org/Misc/blast/Part+II+Theory/Chapter+4.+Sequence+Similarity/4.7+Sum+Statistics+and+Sum+Scores/
Value
Sum score as float.
robbueck/wisard documentation built on Jan. 25, 2022, 12:35 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
View source: R/WIS_functions.R
Description
Caclulated BLAST sum-score from raw-scores and BLAST search statistics
Usage
1 | sum_score(b, metadata)
|
Arguments
b |
Vector of integers or floats. |
metadata |
BLAST metadata as returned by read_blast_xml. A data.frame object with one row containing the columns Statistics_lambda, Statistics_kappa, query_len and Statistics_db.le |
Details
This function calculates the BLAST sum-score as described in Equation 4-17 here: http://etutorials.org/Misc/blast/Part+II+Theory/Chapter+4.+Sequence+Similarity/4.7+Sum+Statistics+and+Sum+Scores/
Value
Sum score as float.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.