filter_blast: Simple BLAST-results filter

Description Usage Arguments

View source: R/read_blast.R

Description

Filter BLAST-results by different criteria. Removes every alignment not fulfilling the criteria

Usage

1
filter_blast(raw_granges, min_len = 0, max_e = 100, min_identity = 0)

Arguments

raw_granges

A GRangesList as returned from read_blast_xml.

min_len, max_e, min_identity

Integer or float to filter the BLAST-results by minimum length, maximum e-value or minimum percent idenity

grange_output

If set TRUE, output it a GRangesList object, otherwise a data.frame object.

keep_sequences

If FALSE, sequence and alignment columns are discarded.


robbueck/wisard documentation built on Jan. 25, 2022, 12:35 a.m.