Files in robertness/pathflow
Converts biochemical reaction networks to pathway maps.
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
PathFlow.Rproj
R/PathFlow.R
R/graph-plots.R
README.md
data/huang_mapk_edgelist.Rdata
data/huang_mapk_vertexlist.Rdata
data/schoeberl.Rdata
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/Singh2006.cys
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/Singh2006_curated_model.xml
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/Singh2006_no_backward_reactions.andl
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/Singh2006_no_backward_reactions.cps
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/Singh2006_no_backward_reactions.xml
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/Singh2006_no_backward_reactions_P.inv
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p10
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p11
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p12
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p13
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p14
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p15
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p3
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p4
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p5
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p6
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p7
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p8
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/p9
inst/biomodel_data/Singh2006_IL6_Signal_Transduction/publication.pdf
inst/extdata/schoeberl-processing.R
inst/extdata/schoeberl.R
inst/extdata/schoeberl.csv
man/PathFlow-package.Rd
man/deleteOneOfTwoVertices.Rd
man/drawGraphWithInvariants.Rd
man/getMinimalInvariants.Rd
man/getOverlapEdges.Rd
man/getPetriNetMatrices.Rd
man/getReactionAncestors.Rd
man/makeOneWay.Rd
man/parseBipartiteEdges.Rd
vignettes/Singh2006_IL6_Signal_Transduction.Rmd
vignettes/cpd-modeling-outline.Rmd
vignettes/cpd-modeling-outline.html
vignettes/protein-set-performance.Rmd
vignettes/schoeberl-analysis.rmd
vignettes/schoeberl-data-processing.rmd
vignettes/simple-mapk-analysis.rmd
