getOverlapEdges: Find overlapping p-invariants

Description Usage Arguments Value

View source: R/PathFlow.R

Description

One of the sources of edges in the pathway map that is implied by a biochemical network is cases of p-invariants that share common vertices. These 'overlapping' invariants will share a common edge in the pathway map.

Usage

1
getOverlapEdges(pInvariants)

Arguments

pInvariants

a list where each element contains a character array of the names of vertices in a network. These are returned by the getMinimalInvariants function.

Value

A list, where each element is a pair of indices of connected pInvariants in the final matrix.


robertness/pathflow documentation built on May 25, 2017, 5:22 a.m.