Files in robertness/signalgraph

Signal Processing with Graphs

.gitignore.R R/causal-prioritization.R R/data-structure.R R/fitting.R R/signalgraph.R R/templates.R R/tools.R README.md inst/extdata/gdsc.R inst/extdata/historic_fits.R inst/extdata/mapk_g.R inst/extdata/tcell_simulation.R inst/extdata/titantic3-processing.R inst/extdata/transformations.R inst/problems.md man/addBiases.Rd man/addDataToVertices.Rd man/add_error.Rd man/add_gauss_error.Rd man/causal_prioritization.Rd man/checkArgs.Rd man/checkVector.Rd man/doChainRule.Rd man/examine_signal_graph.Rd man/fitNetwork.Rd man/fit_weights_for_node.Rd man/format_vertex_list.Rd man/getGradientFunction.Rd man/getMSE.Rd man/getObjective.Rd man/getOptimizationFunction.Rd man/getOptimizationFunctionNG.Rd man/getPrediction.Rd man/get_fitted.Rd man/get_gate.Rd man/get_structure.Rd man/gradientDescent.Rd man/historic_fits.Rd man/initializeEdges.Rd man/initializeGraph.Rd man/initializeGraphAttributes.Rd man/initializeVectorAttributesForVertex.Rd man/initializeVertexBooleans.Rd man/initializeVertexVectors.Rd man/initializeVertices.Rd man/initializeWeights.Rd man/k_order_union.Rd man/loadCN.Rd man/logistic.Rd man/logistic_to_positive.Rd man/long_test.Rd man/mapk_g.Rd man/power_signal_graph.Rd man/power_sim_no_singleton.Rd man/rand_case.Rd man/random_sg.Rd man/random_unfit_sg.Rd man/recover_design.Rd man/regenerate_graph_data.Rd man/rescale_df.Rd man/resetUpdateAttributes.Rd man/sg_viz.Rd man/signalgraph-package.Rd man/sim_data_from_system.Rd man/sim_system.Rd man/titanic3.Rd man/transformations.Rd man/update_signals.Rd man/update_weights.Rd prelim_sim_results.pdf tests/testthat.R tests/testthat/test-causal_prioritization.R tests/testthat/test-data-structure.R tests/testthat/test-fitting.R tests/testthat/test-templates.R tests/testthat/test_dir/test_helpers.R todo.md vignettes/cell_signalling.Rmd vignettes/dag_performance.Rmd vignettes/data_structure.Rmd vignettes/kegg_tcell_model.Rmd vignettes/novel_discovery_simulation.Rmd vignettes/tcell_simulation.Rmd