newTagMeppr: newTagMeppr

In robinweide/tagmeppr: A computational pipeline to map tagmap-insertions

Description

Construct a tagMepprExperiment-object from a tagmap-sample.

Usage

newTagMeppr(F1, F2, R1, R2, name, protocol = "PiggyBac")

Arguments

F1	The path to forward_R1.fastq.gz.
F2	The path to forward_R2.fastq.gz.
R1	The path to reverse_R1.fastq.gz.
R2	The path to reverse_R2.fastq.gz.
name	The name of the sample.
protocol	Either PiggyBac or SleepingBeauty are supported, but other protocols are allowed.

Value

A tagMepprSample-object with the following slots:

F1

The path of forward_R1.fastq.gz.

F2

The path of forward_R2.fastq.gz.

R1

The path of reverse_R1.fastq.gz.

R2

The path of reverse_R2.fastq.gz.

name

The name of the sample.

protocol

The name of the protocol.

rev5_fwd3

Flag for checkPrimer().

Author(s)

Robin H. van der Weide, [e-mail]

Examples

## Not run: 
C9 = newTagMeppr(F1 = 'clone9_FWD_R1.fq.gz',
                 F2 = 'clone9_FWD_R2.fq.gz',
                 R1 = 'clone9_REV_R1.fq.gz',
                 R2 = 'clone9_REV_R2.fq.gz',
                 name = "clone9",
                 protocol = 'PiggyBac')

## End(Not run)

robinweide/tagmeppr documentation built on Feb. 26, 2020, 10:41 p.m.