filter_by_generation_or_numcells: Filter a data frame by Generation or NumCells

In robjohnnoble/demonanalysis: Analysis and plotting of demon data

Description

Filter a data frame by Generation or NumCells

Usage

filter_by_generation_or_numcells(df, path, generation = NA,
  numcells = NA, num_parameters = NA)

Arguments

df	data frame
path	folder containing output.dat (needed for numcells only)
generation	Generation at which to filter (default NA corresponds to no filtering)
numcells	Number of cells at which to filter (default NA corresponds to no filtering)
num_parameters	Number of parameters, accounting for the first set of columns in the dataframe; required if df represents multiple simulations

Details

If both generation and numcells are provided then numcells takes precedent. If numcells is provided and df lacks a NumCells column then a NumCells column will be added (using the output.dat file in the folder specified by path), unless df contains multiple seed values, in which case an error will result.

Value

the combined dataframe

Examples

df <- read_delim_special(system.file("extdata", "output_allele_counts.dat", 
package = "demonanalysis", mustWork = TRUE))
filter_by_generation_or_numcells(df, NA, generation = 10, numcells = NA)
my_path <- system.file("extdata", package = "demonanalysis", mustWork = TRUE)
filter_by_generation_or_numcells(df, my_path, generation = NA, numcells = 100)

robjohnnoble/demonanalysis documentation built on June 30, 2020, 12:47 a.m.