Files in robschick/tangled
Creates data objects and plots for Knowlton, Schick et al. manuscript on entanglement
.Rbuildignore
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/099_decadal_boxplot.R
R/099_explore-weibull.R
R/099_explore-weibull.Rmd
R/099_explore-weibull.html
R/099_fit-weibull_w-covariates.Rmd
R/099_fit-weibull_w-covariates.html
R/2018-01-10-NewSurvivalHealthSummary.Rmd
R/2018-01-10-NewSurvivalSummary.Rmd
R/MakeYearmon.R
R/calcAnom.R
R/calcKMCurves.R
R/calcKMCurvesSevGen.R
R/calcKMUncertainty.R
R/calc_time_since_entanglement.R
R/calc_time_since_pregnancy.R
R/calc_time_since_pregnancy_semi-markov.R
R/calckdpaSurvdat.R
R/calcpresdSurvdat.R
R/cleanMerge.R
R/data.R
R/eda_interval_analysis.R
R/getDeaths.R
R/helperData.R
R/interval_analysis_semi-markov.R
R/makeEvents.R
R/makeTangle.R
R/plotBoxplotHealth.R
R/plotHealthThreshold.R
R/plotHealthThreshold_boxplot.R
R/plotSlopeHealth.R
R/plotSurv.R
R/plotSurvGenderSeverity.R
R/prepBoxplotHealthData.R
R/prepHealthThresholdPlotData.R
R/prepSlopeHealthData.R
R/prepSlopeHealthDataAnnotation.R
R/prepSlopeHealthDataBarplot.R
R/prepSlopeHealthDataMedian.R
R/prephThreshDataRepro.R
R/prephThreshDataUnImp.R
R/presDeadsurvdat.R
R/returnHealth_by_calving_interval.R
R/returnPophealth.R
R/returnSurvdf.R
R/returnUnimpactedHealth.R
R/returnhealthAnom.R
R/tangled.R
R/winDiagram.R
README.md
data-raw/2019-04-03_Tbl-Whale-Entanglement.csv
data-raw/2019-04-08_All-calving-events.csv
data-raw/2019-04-08_All-dead-events_non-ID-removed.csv
data-raw/EntglEstimatedStartDates.csv
data-raw/TimingEntanglementReformatDate.csv
data-raw/makeDeathyear.R
data-raw/prepAmyEntanglementData.R
data-raw/prepAnomaly.R
data-raw/sights.rds
data/ID.rda
data/anom.rda
data/anomSP.rda
data/calfTable.rdata
data/calves.rda
data/dcut.rda
data/deadTable.rda
data/deathyr.rda
data/entvec.rda
data/estStartDates.rda
data/etime.rda
data/firstSight.rda
data/gender.rda
data/healthmean.rda
data/healthmeanSP.rda
data/healthsd.rda
data/lastSight.rda
data/myName.rda
data/ng.rda
data/nt.rda
data/pophealth.rda
data/sumh.rda
data/sumh2.rda
data/tangNonRepro.rda
data/tangRepro.rda
data/tangleAll.rda
data/tangleOut.rda
data/tangled.rda
man/ID.Rd
man/anom.Rd
man/anomSP.Rd
man/calcAnom.Rd
man/calcKMCurves.Rd
man/calcKMCurvesSevGen.Rd
man/calcKMUncertainty.Rd
man/calckdpaSurvdat.Rd
man/calcpresdSurvdat.Rd
man/calfTable.Rd
man/cleanMerge.Rd
man/dcut.Rd
man/deadTable.Rd
man/deathyr.Rd
man/entvec.Rd
man/estStartDates.Rd
man/etime.Rd
man/firstSight.Rd
man/gender.Rd
man/getDeaths.Rd
man/healthmean.Rd
man/healthmeanSP.Rd
man/healthsd.Rd
man/lastSight.Rd
man/makeEvents.Rd
man/makeTangle.Rd
man/makeYearmon.Rd
man/myName.Rd
man/ng.Rd
man/nt.Rd
man/plotBoxplotHealth.Rd
man/plotHealthThreshold.Rd
man/plotSlopeHealth.Rd
man/plotSurv.Rd
man/plotSurvGenderSeverity.Rd
man/pophealth.Rd
man/prepBoxplotHealthData.Rd
man/prepHealthThresholdPlotData.Rd
man/prepSlopeHealthData.Rd
man/prepSlopeHealthDataAnnotation.Rd
man/prepSlopeHealthDataBarplot.Rd
man/prepSlopeHealthDataMedian.Rd
man/prephThreshDataRepro.Rd
man/prephThreshDataUnImp.Rd
man/presDeadsurvdat.Rd
man/returnHealth_by_calving_interval.Rd
man/returnPophealth.Rd
man/returnSurvdf.Rd
man/returnUnimpactedHealth.Rd
man/returnhealthAnom.Rd
man/tangNonRepro.Rd
man/tangRepro.Rd
man/tangleAll.Rd
man/tangleOut.Rd
man/tangled.Rd
man/winDiagram.Rd
src.Rproj
testoutput_Olddata.csv
tests/testthat.R
vignettes/ExtractionWindow.Rmd
vignettes/HealthBelowSpecificPct.Rmd
vignettes/boxplotHealth.Rmd
vignettes/calfStats.Rmd
vignettes/calving-interval.Rmd
vignettes/calving-interval_pregnancy.Rmd
vignettes/calving-interval_pregnancy_semi-markov.Rmd
vignettes/entanglementProgression.Rmd
vignettes/entanglementProgression.docx
vignettes/slopePlotHealth.Rmd
vignettes/survivalNoShipStrike.Rmd
vignettes/survivalPlots.Rmd
