read.MFCLVar: Read Var File
In robscott3/FLR4MFCL: R Functions for Taming MULTIFAN-CL
read.MFCLVar R Documentation
Read Var File
Description
Read reference point estimates from the .var file.
Usage
read.MFCLVar(varfile)
Arguments
varfile
filename ending with .var.
Value
Vector of reference point estimates, including standard errors.
Warning
The calculation of the Frecent/Fmsy in the .var file is based on a
harvest rate approach, comparing catch in tonnes with biomass in tonnes.
Importantly, this is different from the calculation of Frecent/Fmsy in the
.rep file, which uses an instantaneous mortality rate, comparing catch
in numbers with population size in numbers.
The choice between reading Frecent/Fmsy from the .rep file or the
.var file should therefore be based on an informed decision,
understanding the differences between the two approaches.
Note
The .var file is produced by MFCL as a result of delta-method
analysis, following Hessian calculations.
See Also
read.MFCLRep.
Examples
## Not run:
read.MFCLVar("yft.var")
## End(Not run)
robscott3/FLR4MFCL documentation built on April 9, 2024, 3:31 p.m.
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| read.MFCLVar | R Documentation |
Read Var File
Description
Read reference point estimates from the .var file.
Usage
read.MFCLVar(varfile)
Arguments
varfile |
filename ending with |
Value
Vector of reference point estimates, including standard errors.
Warning
The calculation of the Frecent/Fmsy in the .var file is based on a
harvest rate approach, comparing catch in tonnes with biomass in tonnes.
Importantly, this is different from the calculation of Frecent/Fmsy in the
.rep file, which uses an instantaneous mortality rate, comparing catch
in numbers with population size in numbers.
The choice between reading Frecent/Fmsy from the .rep file or the
.var file should therefore be based on an informed decision,
understanding the differences between the two approaches.
Note
The .var file is produced by MFCL as a result of delta-method
analysis, following Hessian calculations.
See Also
read.MFCLRep.
Examples
## Not run:
read.MFCLVar("yft.var")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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