Man pages for robscott3/FLR4MFCL
R Functions for Taming MULTIFAN-CL
| accessor-methods | Accessor methods |
| ageflag | ageflag |
| ats | ats |
| availableMFCLversions | availableMFCLversions |
| catchWfromcatchN | catchWfromcatchN |
| checkUnitDimnames | checkUnitDimnames |
| cordf | Correlation Data Frame |
| corFilter | Correlation Filter |
| corLabel | Correlation Labels |
| cormat | Correlation Matrix |
| diffFlags | Diff Flags |
| diffFlagsStepwise | Diff Flags Stepwise |
| diffIniStepwise | Diff Ini Stepwise |
| finalPar | Final Par File |
| finalRep | Final Rep File |
| firstYear | First Year |
| fishflag | Get Fish Flag Settings |
| flagMeaning | Flag Meaning |
| flagSort | Flag Sort |
| flagSummary | Flag Summary |
| flagval | flagval |
| generate | 'generate()' method for FLR4MFCL |
| genericMethods | realisations |
| getMFCLversion | getMFCLversion |
| gradients | gradients |
| hcr_funcs | hcr_threshold |
| mat2MFCLCor | Correlation Matrix to Data Frame |
| MFCLALK | MFCLALK |
| MFCLALK-class | An S4 class : Size frequency information from the frq file. |
| MFCLBase | MFCLBase |
| MFCLBiol | MFCLBiol |
| MFCLCatch | MFCLCatch |
| MFCLEMControl | MFCLEMControl |
| MFCLEMControl-class | An S4 class : Control object for estimation model. |
| MFCLEquilibrium | MFCLEquilibrium |
| MFCLEquilibrium-class | An S4 class : Size frequency information from the frq file. |
| MFCLFlags | MFCLFlags |
| MFCLFrq | MFCLFrq |
| MFCLFrq2 | MFCLFrq2 |
| MFCLFrq2-class | An S4 class : Representation of a frq input file for MFCL... |
| MFCLFrq-class | An S4 class : Representation of a frq input file for MFCL |
| MFCLFrqStats | MFCLFrqStats |
| MFCLFrqStats-class | An S4 class : Essential dimensions and ranges of the frq... |
| MFCLIni | MFCLIni |
| MFCLIniBits | MFCLIniBits |
| MFCLIni-class | An S4 class : Model information from the ini file. |
| MFCLLenFit | MFCLLenFit |
| MFCLLenFit-class | An S4 class : Length composition fits from a 'length.fit'... |
| MFCLLenFreq | MFCLLenFreq |
| MFCLLenFreq2 | MFCLLenFreq2 |
| MFCLLenFreq2-class | An S4 class : Size frequency information from the frq file. |
| MFCLLenFreq-class | An S4 class : Length frequency information from the frq file. |
| MFCLLikelihood | MFCLLikelihood |
| MFCLLikelihood-class | An S4 class : Likelihood components. |
| mfcl-methods | effort_dev_coffs |
| MFCLMSEControl | MFCLMSEControl |
| MFCLMSEControl-class | An S4 class : Controls the MSE simulations |
| MFCLPar | MFCLPar |
| MFCLParBits | MFCLParBits |
| MFCLPar-class | An S4 class : Undocumented. |
| MFCLprojControl | MFCLprojControl |
| MFCLprojControl-class | An S4 class : Undocumented. |
| MFCLPseudo | MFCLPseudo |
| MFCLPseudo-class | An S4 class : Undocumented. |
| MFCLPseudoControl | MFCLPseudoControl |
| MFCLRec | MFCLRec |
| MFCLRegion | MFCLRegion |
| MFCLRep | MFCLRep |
| MFCLRep-class | An S4 class : Model information from the rep file. |
| MFCLSel | MFCLSel |
| MFCLTag | MFCLTag |
| MFCLTag-class | An S4 class : Undocumented. |
| MFCLTagProj | MFCLTagProj |
| MFCLTagProj-class | An S4 class : Undocumented. |
| MFCLTagRep | MFCLTagRep |
| MFCLWgtFit | MFCLWgtFit |
| parestflag | parestflag |
| par-methods | as.MFCLIni |
| qts | qts |
| read.fishmort | read.fishmort |
| read.MFCLALK | read.MFCLALK |
| read.MFCLBiol | read.MFCLBiol |
| read.MFCLCatch | read.MFCLCatch |
| read.MFCLCatchSim | Read MFCL Catch Sim |
| read.MFCLCor | Read Correlation Matrix |
| read.MFCLFlags | read.MFCLFlags |
| read.MFCLFrq | MFCL frq file reader |
| read.MFCLFrq2 | MFCL frq2 file reader - Mufdagr friendly |
| read.MFCLFrqStats | MFCL Frq Statistics |
| read.MFCLIni | read.MFCLIni |
| read.MFCLLenFit | read.MFCLLenFit |
| read.MFCLLenFreq | MFCL Length Frequency |
| read.MFCLLenFreq2 | MFCL Length Frequency2 - MUFDAGR friendly |
| read.MFCLLikelihood | Read MFCLLikelihood |
| read.MFCLPar | read.MFCLPar |
| read.MFCLParBits | read.MFCLParBits |
| read.MFCLPseudo | Read MFCLPseudo |
| read.MFCLPseudoCatchEffort | Read MFCLPseudo Catch and Effort |
| read.MFCLPseudoSizeComp | Read MFCLPseudo Size Comp |
| read.MFCLRec | read.MFCLRec |
| read.MFCLRegion | read.MFCLRegion |
| read.MFCLRep | read.MFCLRep |
| read.MFCLSel | read.MFCLSel |
| read.MFCLSimulatedNatAge | read.simulated |
| read.MFCLTag | read.MFCLTag |
| read.MFCLTagRep | read.MFCLTagRep |
| read.MFCLVar | Read Var File |
| read.MFCLWgtFit | read.MFCLWgtFit |
| recPeriod | Recruitment Periods |
| regionflag | regionflag |
| SBmethods | Methods for returns the spawning biomass (fished or unfished)... |
| setMFCLversion | setMFCLversion |
| subset-methods | subset |
| summary_ini | Summarize Ini |
| summary-MFCLLikelihood-method | Summary MFCLLikelihood |
| tagflag | tagflag |
| write-methods | write |
