plot_panoply_spread: plot_panoply_spread

In rogerswt/panoplyCF: Cell-based Analysis Using t-SNE on Cytometric Fingerprints

Description

Draw a picture of the result of panoply for a given set of markers.

Usage

plot_panoply_spread(
  panoply,
  markers = NULL,
  mode = c("arithmetic", "robust"),
  cex = 50,
  proportional = TRUE,
  emph = TRUE,
  cex.lab = 2,
  highlight_clusters = NULL,
  contours = FALSE,
  show_cluster_number = NULL
)

Arguments

panoply	The result of running panoply
markers	Markers to include in the spread
mode	Compute colors using either arithmetic or robust average
cex	Scale factor for node size
proportional	Logical. Scale by the number of events in the cluster
emph	Logical. Emphasize each blob with a black line.
cex.lab	Scale factor for titles of the individual markers
highlight_clusters	Numeric vector indicating which clusters to highlight.
contours	Logical. Plot the original t-SNE contours.
show_cluster_number	If not null, print cluster numbers at the size given.

Value

N/A.

Examples

plot_panoply_spread(panoply_obj)

rogerswt/panoplyCF documentation built on July 12, 2020, 8:49 p.m.