Files in role-model/roleR
Rules of Life Engine
.Rbuildignore
.github/workflows/check_release.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/comm.R
R/getFinalState.R
R/getSumStats.R
R/roleData-divStats.R
R/roleData-rawStats.R
R/roleData.R
R/roleExperiment-methods.R
R/roleExperiment.R
R/roleModel-methods.R
R/roleModel.R
R/roleParams.R
R/rolePhylo.R
R/roleR-package.R
R/runRole.R
R/setContext.R
R/sim_seqs.R
R/writeRoLE.R
R/zzz.R
README.md
_pkgdown.yml
binaries/roleR.zip
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/Intro.html
docs/articles/UseCases.html
docs/articles/basics.html
docs/articles/index.html
docs/articles/roleR_intro.html
docs/articles/roleR_use_cases.html
docs/articles/roleR_use_cases_files/figure-html/iterfuns-1.png
docs/articles/roleR_use_cases_files/figure-html/overview-1.png
docs/authors.html
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.3/bootstrap.min.css
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/buildFun.html
docs/reference/cFun.html
docs/reference/checkRolePhylo.html
docs/reference/createPredModel.html
docs/reference/createRolePredModel.html
docs/reference/dataFunCpp.html
docs/reference/div-sumStats.html
docs/reference/dot-bufferModelData.html
docs/reference/dot-hillDivSAD.html
docs/reference/dot-hillDivTrait.html
docs/reference/dot-lseriesFromSN.html
docs/reference/getFinalState.html
docs/reference/getSumStats.html
docs/reference/getSumStatsMean.html
docs/reference/getTimeseries.html
docs/reference/getValuesFromParams.html
docs/reference/index.html
docs/reference/intFunCpp.html
docs/reference/iterModelCpp.html
docs/reference/localComm.html
docs/reference/metaComm.html
docs/reference/paramValues.html
docs/reference/quickExp.html
docs/reference/quickModel.html
docs/reference/quickModelNonRun.html
docs/reference/quickParams.html
docs/reference/raw-sumStats.html
docs/reference/rawSpAbundance.html
docs/reference/repS4.html
docs/reference/roleData.html
docs/reference/roleDataFromCpp.html
docs/reference/roleDataToCpp.html
docs/reference/roleExperiment.html
docs/reference/roleIterFuns.html
docs/reference/roleModel.html
docs/reference/roleModelGiven.html
docs/reference/roleParams.html
docs/reference/rolePhylo-class.html
docs/reference/rolePhylo.html
docs/reference/rolePriors.html
docs/reference/runRoLE.html
docs/reference/setContext.html
docs/reference/setExpMetadata.html
docs/reference/simGen.html
docs/reference/simulateSpeciesGenDiv.html
docs/reference/sub.html
docs/reference/testRand.html
docs/reference/untbParams.html
docs/reference/vectFunCpp.html
docs/reference/writeRoLE.html
docs/search.json
docs/sitemap.xml
inst/about.Rmd
inst/install_git_depends.R
inst/install_try.R
inst/load_test_model.R
inst/local_only_phylogeny.R
inst/prepRebuild.R
inst/python/README.txt
inst/python/msprime_work.qmd
inst/python/role_msprime.py
inst/reticulate_installs.R
inst/role_rocker_intall.sh
inst/shell_test.R
man/div-sumStats.Rd
man/dot-hillDivSAD.Rd
man/getFinalState.Rd
man/getSumStats.Rd
man/getSumStatsMean.Rd
man/iterModelCpp.Rd
man/localComm.Rd
man/metaComm.Rd
man/raw-sumStats.Rd
man/rawSpAbundance.Rd
man/roleData.Rd
man/roleExperiment-class.Rd
man/roleExperiment-methods.Rd
man/roleExperiment.Rd
man/roleModel-class.Rd
man/roleModel.Rd
man/roleParams.Rd
man/rolePhylo.Rd
man/runRole.Rd
man/testRand.Rd
man/untbParams.Rd
man/writeRole.Rd
roleR.Rproj
scratch/RandomWrap.cp
scratch/Read-and-delete-me
scratch/ajr_sandbox.R
scratch/c_tests/test_cpp_01_helpers.R
scratch/c_tests/test_cpp_02_death_probs.R
scratch/c_tests/test_cpp_03_check_extinction.R
scratch/c_tests/test_cpp_04_death.R
scratch/c_tests/test_cpp_05_birth.R
scratch/c_tests/test_cpp_06_dispersal.R
scratch/c_tests/test_cpp_07_keeping_track.R
scratch/c_tests/test_cpp_08_speciation_local_meta.R
scratch/c_tests/test_cpp_09_speciation_phylo.R
scratch/c_tests/test_cpp_10_sum_recipr.R
scratch/connor_memory_bug.R
scratch/create_write_inputs_outputs.R
scratch/figuring_msrime.R
scratch/figuring_msrime2.R
scratch/frontend_diagram_link.txt
scratch/gen3sis_tests.R
scratch/isaac_newick_fun.R
scratch/jacob_hack_scratch.R
scratch/lv/lv2mess.jpeg
scratch/lv/lv_mess_harmonize.Rmd
scratch/lv/lv_mess_harmonize.pdf
scratch/lv/lv_mess_harmonize_cache/latex/__packages
scratch/lv/lv_mess_harmonize_files/figure-latex/lvclassic-1.pdf
scratch/lv/lv_mess_harmonize_files/figure-latex/lvrep-1.pdf
scratch/lv/lv_mess_harmonize_files/figure-latex/timing_comp-1.pdf
scratch/lv_removed.R
scratch/msprime_bneck_figuring.qmd
scratch/old_s4_speciation.R
scratch/pseudo.as
scratch/r-role-msprime.ipynb
scratch/renata_bug.R
scratch/render_save_markdown.R
scratch/role-msprime-debug.ipynb
scratch/role-msprime-dev.ipynb
scratch/scratch.R
scratch/simSeqs.R
scratch/specPhyloRCpp.cpp
scratch/speciation_test.R
scratch/target_use_cases.R
scratch/test.R
scratch/thinking_about_timeseries.R
scratch/timeseries_for_connor.R
scratch/try_shiny.R
scratch/what2do_about_priors.R
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/iterModelCpp.cpp
src/randExample.cpp
src/roleDataCpp.cpp
src/roleParamsCpp.cpp
tests/testthat.R
tests/testthat/test_r_params.R
tests/testthat/test_r_roleExperiment.R
tests/testthat/test_r_roleModel.R
tests/testthat/test_r_stats.R
vignettes/.gitignore
vignettes/Intro.Rmd
vignettes/UseCases.Rmd
vignettes/UseCases_cache/html/__packages
