API for roliveros-ramos/kali
Tools for habitat and niche modeling
| Global functions | |
|---|---|
| .PBC | Source code |
| .array2vector | Source code |
| .axis.map | Source code |
| .calculateNiche2D | Source code |
| .calculateNicheHull | Source code |
| .calculatePointWeight | Source code |
| .checkLongitude | Source code |
| .coord2text | Source code |
| .doSmooth | Source code |
| .explainedDeviance | Source code |
| .findPrimeMeridian | Source code |
| .fmla2txt | Source code |
| .gam.fmla | Source code |
| .getBestModel | Source code |
| .getConvexHull | Source code |
| .getDensity | Source code |
| .getDistance.old | Source code |
| .getDomain | Source code |
| .getIndex | Source code |
| .getModelVars | Source code |
| .getModelVars2 | Source code |
| .getObjectName | Source code |
| .getOccNumber_GBIF | Source code |
| .getOccurrence | Source code |
| .getOccurrence_GBIF | Source code |
| .getOccurrence_OBIS | Source code |
| .getPair | Source code |
| .getPngFileName | Source code |
| .getTolerance | Source code |
| .getUsedVars | Source code |
| .get_first | Source code |
| .image.mapnl | Source code |
| .inArea | Source code |
| .insider | Source code |
| .insider2 | Source code |
| .interpolateMap | Source code |
| .is_binomial | Source code |
| .kappa | Source code |
| .longitude2Center | Source code |
| .longitude2Left | Source code |
| .makeNameNcdfVar | Source code |
| .na.sum | Source code |
| .plot.niche.models | Source code |
| .plotNicheHull | Source code |
| .plotNicheProb2 | Source code |
| .plotNicheProb3 | Source code |
| .plotSea | Source code |
| .ponderate | Source code |
| .predictNicheModelsNew | Source code |
| .predictNicheModelsOld | Source code |
| .removeSector2 | Source code |
| .removeSector3 | Source code |
| .removeVars | Source code |
| .rotate | Source code |
| .rotate2 | Source code |
| .sevennum | Source code |
| .sub | Source code |
| .toPA | Source code |
| .watermass_oliveros | Source code |
| .watermass_swartzman | Source code |
| .watermass_zuta | Source code |
| AUC | Source code |
| DateStamp | Source code |
| PBC | Source code |
| PredictivePerformance | Source code |
| TSS | Source code |
| addLHT | Source code |
| addPM | Source code |
| add_region | Man page Source code |
| anova.niche.models | Source code |
| assign_region | Man page Source code |
| balancePA | Source code |
| barplot2 | Source code |
| calculateNiche | Source code |
| calculateNiche2 | Source code |
| calculateNiche2D | Source code |
| calculateNiche3 | Source code |
| calculatePointWeight | Source code |
| calculateThresholds | Source code |
| calculateWaterMass | Source code |
| checkLongitude | Source code |
| check_taxon | Source code |
| cleanBIOMOD | Source code |
| cleanZeros | Source code |
| clearAbsences | Source code |
| climatology | Source code |
| convexHull | Source code |
| convexHull.map | Source code |
| coord2text | Source code |
| countMap | Source code |
| createAuxPredictionFiles | Source code |
| createGridAxes | Source code |
| createPredictionFiles | Source code |
| createTimeAxis | Source code |
| density.niche | Source code |
| explDev | Source code |
| explainedDeviance | Source code |
| explainedDeviance.gam | Source code |
| explainedDeviance.glm | Source code |
| explainedDeviance.scam | Source code |
| extractData | Source code |
| extractValidData | Source code |
| fakeGAM | Source code |
| fakeGAM2 | Source code |
| fill.map | Source code |
| fillMap | Source code |
| fillMap.array | Source code |
| fillMap.data.frame | Source code |
| fillMap.matrix | Source code |
| fillMap.prediction.niche.models | Source code |
| fillSquare | Source code |
| findXlim | Source code |
| fitGAM2 | Source code |
| fitGAMs | Source code |
| fitModels | Source code |
| gam.fmla | Source code |
| geq | Source code |
| getBestModel | Source code |
| getCoordinates | Source code |
| getDensity | Source code |
| getDistributionRecords | Man page Source code |
| getFormula | Source code |
| getIsoline | Source code |
| getMap | Source code |
| getMap.prediction.niche.models | Source code |
| getModel | Source code |
| getPredictionMap | Source code |
| getPredictions | Source code |
| getProfiles | Source code |
| getRleIndex | Source code |
| getSeasonalMap | Source code |
| getSignedDistance | Source code |
| getThreshold | Source code |
| getTime | Source code |
| getTolerance | Man page Source code |
| getValuesinRange | Source code |
| getYearMax | Source code |
| getYearMin | Source code |
| get_classification | Source code |
| get_taxon | Source code |
| getmfrow | Source code |
| image.map | Man page |
| insideTesseract | Source code |
| interpolateMap | Source code |
| isInside | Source code |
| kali | Man page |
| kali-package | Man page |
| leq | Source code |
| limitingFactor | Source code |
| load_object | Source code |
| makePredictions | Source code |
| makeTransparent | Source code |
| map.axes2 | Source code |
| map2 | Source code |
| map2coord | Source code |
| map2data | Source code |
| map_details | Man page Source code |
| ncdf2data | Source code |
| normalize | Source code |
| num2date | Source code |
| parse_obis_date | Source code |
| performance | Source code |
| plot.domain | Source code |
| plot.map | Man page Source code |
| plot.niche | Source code |
| plot.niche.models | Source code |
| plot.occ_df | Source code |
| plot.prediction.niche.models | Source code |
| plotMAPt | Source code |
| plotROC | Source code |
| plotThreshold | Source code |
| points.niche | Source code |
| points.occ_df | Source code |
| ponderate | Source code |
| predict.niche.models | Source code |
| pretty.factor | Source code |
| print.kali_explainedDeviance | Source code |
| print.niche.models | Source code |
| print.niche.models.formulas | Source code |
| print.occ_df | Source code |
| printMaps | Source code |
| quantile.factor | Source code |
| rbind.occ_df | Source code |
| read.Herve | Source code |
| regrid | Source code |
| regrid.array | Source code |
| regrid.matrix | Source code |
| regrid.old | Source code |
| regrid2 | Source code |
| regrid2.array | Source code |
| regrid2.matrix | Source code |
| regridMap | Source code |
| removeSector | Source code |
| rename | Source code |
| rename.default | Source code |
| rotate | Source code |
| rotateMap | Source code |
| sample.weighted | Man page Source code |
| saveAnimation | Source code |
| saveAnimation.default | Source code |
| saveAnimation.prediction.niche.models | Source code |
| setDataBase | Source code |
| setFactors | Source code |
| setPredictionFiles | Source code |
| splitDataSet | Source code |
| subset.prediction.niche.models | Source code |
| table.summary | Source code |
| table2array | Source code |
| table2grid | Source code |
| table2ncdf | Source code |
| threshold | Source code |
| toCamel | Source code |
| toPA | Source code |
| toPA.default | Source code |
| toPA.prediction.niche.models | Source code |
| trainingDatabase | Source code |
| trimGAM | Source code |
| window.prediction.niche.models | Source code |
| writePredictionData | Source code |
| xrange | Source code |
| xrange.default | Source code |
| xrange.factor | Source code |
| xxx | Source code |
| year2month | Source code |
