API for roliveros-ramos/kali
Tools for habitat and niche modeling.

Global functions
AUC Source code
DateStamp Source code
PBC Source code Source code
PredictivePerformance Source code
TSS Source code
addLHT Source code
anova.niche.models Source code
array2vector Source code
axis.map Source code
balancePA Source code
barplot2 Source code
calculateNiche Source code
calculateNiche2 Source code
calculateNiche2D Source code Source code
calculateNiche3 Source code
calculateNicheHull Source code
calculatePointWeight Source code Source code
calculateThresholds Source code
calculateWaterMass Source code
checkLongitude Source code Source code
checkScientificName Source code
cleanBIOMOD Source code
cleanZeros Source code
clearAbsences Source code
climatology Source code
convexHull Source code
convexHull.map Source code
coord2text Source code Source code
countMap Source code
createAuxPredictionFiles Source code
createGridAxes Source code
createPredictionFiles Source code
createTimeAxis Source code
density.niche Source code
doSmooth Source code
extractData Source code
extractValidData Source code
fakeGAM Source code
fakeGAM2 Source code
fill.map Source code
fillMap Source code
fillMap.array Source code
fillMap.data.frame Source code
fillMap.matrix Source code
fillMap.prediction.niche.models Source code
fillSquare Source code
findPrimeMeridian Source code
fitGAM2 Source code
fitGAMs Source code
fitModels Source code
fmla2txt Source code
gam.fmla Source code Source code
geq Source code
getBestModel Source code Source code
getConvexHull Source code
getCoordinates Source code
getDensity Source code Source code
getDistance Source code Source code
getDistance.old Source code
getDistributionRecords Man page Source code
getDomain Source code
getFormula Source code
getIndex Source code
getIsoline Source code
getMap Source code
getMap.prediction.niche.models Source code
getModel Source code
getModelVars Source code
getModelVars2 Source code
getObjectName Source code
getOccurrence Source code
getOccurrence_GBIF Source code
getOccurrence_OBIS Source code
getPair Source code
getPngFileName Source code
getPredictionMap Source code
getPredictions Source code
getProfiles Source code
getRleIndex Source code
getSeasonalMap Source code
getSignedDistance Source code
getThreshold Source code
getTime Source code
getUsedVars Source code
getValuesinRange Source code
getYearMax Source code
getYearMin Source code
getmfrow Source code
image.map Man page Source code
insideTesseract Source code
interpolateMap Source code
isInside Source code
kali Man page
kali-package Man page
kappa Source code
leq Source code
limitingFactor Source code
load_object Source code
longitude2Center Source code
longitude2Left Source code
mage.mapnl Source code
makeNameNcdfVar Source code
makePredictions Source code
makeTransparent Source code
map.axes2 Source code
map2 Source code
map2coord Source code
map2data Source code
mapDetails Source code
nArea Source code
na.sum Source code
ncdf2data Source code
normalize Source code
nsider Source code
nsider2 Source code
nterpolateMap Source code
num2date Source code
performance Source code
plot.domain Source code
plot.map Man page Source code
plot.niche Source code
plot.niche.models Source code Source code
plot.prediction.niche.models Source code
plotDistributionMap Source code
plotMAPt Source code
plotNicheHull Source code
plotNicheProb2 Source code
plotNicheProb3 Source code
plotROC Source code
plotSea Source code
plotThreshold Source code
points.niche Source code
ponderate Source code Source code
predict.niche.models Source code
predictNicheModelsNew Source code
predictNicheModelsOld Source code
pretty.factor Source code
print.niche.models Source code
print.niche.models.formulas Source code
print.occ_df Source code
printMaps Source code
quantile.factor Source code
rbind.occ_df Source code
read.Herve Source code
regrid Source code
regrid.array Source code
regrid.matrix Source code
regrid.old Source code
regrid2 Source code
regrid2.array Source code
regrid2.matrix Source code
regridMap Source code
removeSector Source code
removeSector2 Source code
removeSector3 Source code
removeVars Source code
rename Source code
rename.default Source code
rotate Source code Source code
rotate2 Source code
rotateMap Source code
sample.weighted Man page Source code
saveAnimation Source code
saveAnimation.default Source code
saveAnimation.prediction.niche.models Source code
setDataBase Source code
setFactors Source code
setPredictionFiles Source code
sevennum Source code
splitDataSet Source code
sub Source code
subset.prediction.niche.models Source code
table.summary Source code
table2array Source code
table2grid Source code
table2ncdf Source code
toCamel Source code
toPA Source code Source code
toPA.default Source code
toPA.prediction.niche.models Source code
trainingDatabase Source code
trimGAM Source code
watermass_oliveros Source code
watermass_swartzman Source code
watermass_zuta Source code
window.prediction.niche.models Source code
writePredictionData Source code
xrange Source code
xrange.default Source code
xrange.factor Source code
xxx Source code
year2month Source code
roliveros-ramos/kali documentation built on April 26, 2018, 2:47 a.m.