R/datasets.R

In romunov/fishbone: Tools for Calling Alleles/Genotypes from Illumina NGS Sequences

#' @name smp1
#' @title Reads of microsatellite sequences of a non-invasive sample
#' @description NGS (next generation sequencer) data from a project contains sequences, their read count,
#' sample name, repeat number (PCR plate), marker (locus) designation, run name (arbitrary), position
#' (on PCR plate), length of sequence, combination of tags used and of course, the microsatellite sequence
#' itself.
#' @docType data
#' @usage smp1
#' @format A data.table.
#' @source LIFE DinAlpBear project
#' @keywords dataset
#' @author Roman Lustrik, Tomaz Skrbinsek, Maja Jelencic, Meta Konec
NULL

#' @name mt
#' @title Lookup table of calling parameters
#' @description Algorithm of calling alleles uses some prio information about alleles and stutters.
#' This table provide these values. Tweak or create according to your needs.
#' @docType data
#' @usage mt
#' @format A data.table.
#' @source LIFE DinAlpBear project
#' @keywords dataset
#' @author Roman Lustrik, Tomaz Skrbinsek, Maja Jelencic, Meta Konec
NULL