Files in ropensci/UCSCXenaTools
Download and Explore Datasets from UCSC Xena Data Hubs

.Rbuildignore
.github/workflows/greetings.yml
.github/workflows/main.yml
.gitignore
.travis.yml
CRAN-RELEASE
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md R/XenaBrowse.R R/XenaDownload.R R/XenaFilter.R R/XenaGenerate.R R/XenaHub-class.R R/XenaPrepare.R R/XenaQuery.R R/XenaQueryProbeMap.R R/XenaScan.R R/api_higher.R R/api_inner.R R/api_xq.R R/data.R R/fetch.R R/shiny.R R/simplify.R R/utils-pipe.R R/zzz.R README.Rmd README.md
UCSCXenaTools.Rproj
_pkgdown.yml
appveyor.yml
codecov.yml
codemeta.json
data/XenaData.rda
docs/404.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/USCSXenaTools.html
docs/articles/USCSXenaTools_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/XenaBrowse.html
docs/reference/XenaData.html
docs/reference/XenaDataUpdate.html
docs/reference/XenaDownload.html
docs/reference/XenaFilter.html
docs/reference/XenaGenerate.html
docs/reference/XenaHub-class.html
docs/reference/XenaHub.html
docs/reference/XenaPrepare.html
docs/reference/XenaQuery.html
docs/reference/XenaQueryProbeMap.html
docs/reference/XenaScan.html
docs/reference/XenaShiny.html
docs/reference/availTCGA.html
docs/reference/cohorts.html
docs/reference/datasets.html
docs/reference/downloadTCGA.html
docs/reference/fetch.html
docs/reference/figures/logo.png
docs/reference/getTCGAdata.html
docs/reference/hosts.html
docs/reference/index.html
docs/reference/pipe.html
docs/reference/samples.html
docs/reference/showTCGA.html
docs/reference/to_snake.html
docs/reference/xena_default_hosts.html
inst/CITATION
inst/api.RData
inst/dataset_metadata.RData
inst/develop.R
inst/queries/allCohorts.xq
inst/queries/allDatasets.xq
inst/queries/allDatasetsN.xq
inst/queries/allFieldMetadata.xq
inst/queries/cohortSamples.xq
inst/queries/cohortSummary.xq
inst/queries/datasetFetch.xq
inst/queries/datasetField.xq
inst/queries/datasetFieldExamples.xq
inst/queries/datasetFieldN.xq
inst/queries/datasetGeneProbeAvg.xq
inst/queries/datasetGeneProbesValues.xq
inst/queries/datasetList.xq
inst/queries/datasetMetadata.xq
inst/queries/datasetProbeSignature.xq
inst/queries/datasetProbeValues.xq
inst/queries/datasetSamples.xq
inst/queries/datasetSamplesNDenseMatrix.xq
inst/queries/datasetsNullRows.xq
inst/queries/featureList.xq
inst/queries/fieldCodes.xq
inst/queries/fieldMetadata.xq
inst/queries/geneTranscripts.xq
inst/queries/matchFields.xq
inst/queries/probeCount.xq
inst/queries/probemapList.xq
inst/queries/refGeneExons.xq
inst/queries/refGenePosition.xq
inst/queries/refGeneRange.xq
inst/queries/segmentDataExamples.xq
inst/queries/segmentedDataRange.xq
inst/queries/sparseData.xq
inst/queries/sparseDataExamples.xq
inst/queries/sparseDataMatchField.xq
inst/queries/sparseDataMatchFieldSlow.xq
inst/queries/sparseDataMatchPartialField.xq
inst/queries/sparseDataRange.xq
inst/queries/transcriptExpression.xq
inst/test_api.R man/XenaBrowse.Rd man/XenaData.Rd man/XenaDataUpdate.Rd man/XenaDownload.Rd man/XenaFilter.Rd man/XenaGenerate.Rd man/XenaHub-class.Rd man/XenaHub.Rd man/XenaPrepare.Rd man/XenaQuery.Rd man/XenaQueryProbeMap.Rd man/XenaScan.Rd man/XenaShiny.Rd man/availTCGA.Rd man/cohorts.Rd man/datasets.Rd man/downloadTCGA.Rd man/fetch.Rd
man/figures/logo.png
man/getTCGAdata.Rd man/hosts.Rd man/pipe.Rd man/samples.Rd man/showTCGA.Rd man/to_snake.Rd man/xena_default_hosts.Rd
paper/overview.png
paper/paper.Rmd
paper/paper.bib
paper/paper.md
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R tests/testthat/test-basic-workflow.R tests/testthat/test-full-tests.R
vignettes/.gitignore
vignettes/USCSXenaTools.Rmd
ropensci/UCSCXenaTools documentation built on Oct. 6, 2020, 10:05 a.m.