Man pages for ropensci/rotl
Interface to the 'Open Tree of Life' API
| get_study | Get all the trees associated with a particular study |
| get_study_meta | Study Metadata |
| get_study_subtree | Study Subtree |
| get_study_tree | Study Tree |
| is_in_tree | Check that OTT ids occur in the Synthetic Tree |
| list_trees | List trees ids in objects returned by 'studies_find_studies'... |
| match_names | Inspect and Update alternative matches for a name returned by... |
| match_names-methods | 'ott_id' and 'flags' for taxonomic names matched by... |
| rotl | An Interface to the Open Tree of Life API |
| source_list | List of studies used in the Tree of Life |
| strip_ott_ids | Strip OTT ids from tip labels |
| studies_find_studies | Find a Study |
| studies_find_trees | Find Trees |
| studies_properties | Properties of the Studies |
| study_external_IDs | Get external identifiers for data associated with an Open... |
| synonyms.match_names | List the synonyms for a given name |
| tax_lineage | Lineage of a taxon |
| taxon_external_IDs | Get external identifiers for data associated with an Open... |
| taxonomy_about | Information about the Open Tree Taxonomy |
| taxonomy-methods | Methods for Taxonomy |
| taxonomy_mrca | Taxonomic MRCA |
| taxonomy_subtree | Taxonomy subtree |
| taxonomy_taxon_info | Taxon information |
| tnrs_contexts | TNRS contexts |
| tnrs_infer_context | Infer the taxonomic context from a list of names |
| tnrs_match_names | Match names to the Open Tree Taxonomy |
| tol_about | Information about the Tree of Life |
| tol_induced_subtree | Subtree from the Open Tree of Life |
| tol_mrca | MRCA of taxa from the synthetic tree |
| tol_node_info | Node info |
| tol_subtree | Extract a subtree from the synthetic tree |
