Files in ropensci/rotl
Interface to the 'Open Tree of Life' API
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
.pre-commit-config.yaml
CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/api-collections.R
R/api-studies.R
R/api-taxonomy.R
R/api-tnrs.R
R/api-tol.R
R/base.R
R/deduplicate_labels.R
R/external_data.R
R/is_in_tree.R
R/match_names.R
R/methods.R
R/rotl-package.R
R/studies-methods.R
R/studies-utils.R
R/studies.R
R/tax_utils.R
R/taxonomy.R
R/tnrs.R
R/tol.R
R/tree_to_labels.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codemeta.json
cran-comments.md
inst/CITATION
inst/extdata/egg.csv
inst/extdata/mcmcglmm_model.rds
inst/extdata/protist_mutation_rates.csv
man/figures/logo.svg
man/get_study.Rd
man/get_study_meta.Rd
man/get_study_subtree.Rd
man/get_study_tree.Rd
man/is_in_tree.Rd
man/list_trees.Rd
man/match_names-methods.Rd
man/match_names.Rd
man/rotl.Rd
man/source_list.Rd
man/strip_ott_ids.Rd
man/studies_find_studies.Rd
man/studies_find_trees.Rd
man/studies_properties.Rd
man/study_external_IDs.Rd
man/synonyms.match_names.Rd
man/tax_lineage.Rd
man/taxon_external_IDs.Rd
man/taxonomy-methods.Rd
man/taxonomy_about.Rd
man/taxonomy_mrca.Rd
man/taxonomy_subtree.Rd
man/taxonomy_taxon_info.Rd
man/tnrs_contexts.Rd
man/tnrs_infer_context.Rd
man/tnrs_match_names.Rd
man/tol_about.Rd
man/tol_induced_subtree.Rd
man/tol_mrca.Rd
man/tol_node_info.Rd
man/tol_subtree.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/test-all.R
tests/testthat/test-API.R
tests/testthat/test-api-studies.R
tests/testthat/test-api-taxonomy.R
tests/testthat/test-api-tnrs.R
tests/testthat/test-api-tol.R
tests/testthat/test-base.R
tests/testthat/test-deduplicate_labels.R
tests/testthat/test-external.R
tests/testthat/test-match_names.R
tests/testthat/test-studies.R
tests/testthat/test-taxonomy.R
tests/testthat/test-tnrs.R
tests/testthat/test-tol.R
tests/testthat/test-tree_to_labels.R
tests/tree_of_life.json
vignettes/data_mashups.Rmd
vignettes/data_mashups.Rmd.orig
vignettes/fig-vignettes-birds_in_a_tree-1.png
vignettes/fig-vignettes-eggs_in_a_funnel-1.png
vignettes/fig-vignettes-subtree-1.png
vignettes/fig-vignettes-unnamed-chunk-1-1.png
vignettes/fig-vignettes-unnamed-chunk-16-1.png
vignettes/fig-vignettes-unnamed-chunk-3-1.png
vignettes/fig-vignettes-unnamed-chunk-8-1.png
vignettes/make-vignettes.R
vignettes/meta-analysis.Rmd
vignettes/meta-analysis.Rmd.orig
vignettes/rotl.Rmd
vignettes/rotl.Rmd.orig
vignettes/vignette.css
