Man pages for ropensci/treebase
Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
| cache_treebase | A function to cache the phylogenies in treebase locally |
| clean_data | clean the fish.base data into pure ASCII |
| download_metadata | Download the metadata on treebase using the OAI-MPH interface |
| drop_nonascii | remove non-ASCII characters |
| drop_nontrees | drop errors from the search |
| dryad_metadata | Search the dryad metadata archive |
| get_nex | imports phylogenetic trees from treebase. internal function |
| get_study | return the trees in treebase that correspond to the search... |
| get_study_id | return the study.id from the search results. |
| have_branchlength | Simple function to identify which trees have branch lengths |
| metadata | metadata.rda |
| metadata_from_oai | Internal function for OAI-MPH interface to the Dryad database |
| oai_metadata | Search the OAI-PMH metadata by date, publisher, or identifier |
| phylo_metadata | Search the PhyloWS metadata |
| search_treebase | A function to pull in the phyologeny/phylogenies matching a... |
| show_metadata | Get the metadata associated with the study in which the... |
| treebase | treebase.rda |
