get_study: return the trees in treebase that correspond to the search...

In ropensci/treebase: Discovery, Access and Manipulation of 'TreeBASE' Phylogenies

return the trees in treebase that correspond to the search results get_study is deprecated, and now can be performed more easily using phylo_metadata and oai_metadata search functions.

Description

return the trees in treebase that correspond to the search results get_study is deprecated, and now can be performed more easily using phylo_metadata and oai_metadata search functions.

Usage

get_study(search_results, curl = getCurlHandle(), ...)

Arguments

search_results	the output of download_metadata, or a subset thereof
curl	the handle to the curl web utility for repeated calls, see the getCurlHandle() function in RCurl package for details.
...	additional arguments to pass to search_treebase

Details

this function is commonly used to get trees corresponding to the metadata search.

Value

all corresponding phylogenies.

ropensci/treebase documentation built on Feb. 18, 2024, 1:57 p.m.