mxr_create_haploview_inputs: Create the Haploview Input Files.
In roslen/mxr: A Package of GWAS Pipeline Building Blocks

Description Usage Arguments Details Value

mxr_create_haploview_inputs creates the input files necessary to run Haploview.

1 2	mxr_create_haploview_inputs(genotype_prefix, snps_list = "", out_prefix = "", verbose = FALSE)

`genotype_prefix`	The fullpath and prefix of the bim/bed/fam plink files.
`snps_list`	The list of clumped SNPs.
`out_prefix`	Path and prefix of the output files.
`verbose`	(Optional) Show verbose output. (DEFAULT=FALSE)

The output of this file is required to run Haploview. It recodes in haploview format the plink file, and then creates the batch input file that would subsequently be fed into haploview.

TRUE if the PLINK run completed successfully. FALSE, otherwise.

roslen/mxr documentation built on May 27, 2019, 11:32 p.m.