devolutePlan: Devolute mating plan to reduce relatedness

In rramadeu/SimpleMating: Simple mating allocation for small breeding programs

Devolute mating plan to reduce relatedness

Description

Devolute mating plan to reduce relatedness

Usage

devolutePlan(
  data,
  K,
  n.cross = 200,
  max.cross = 4,
  min.cross = 2,
  max.cross.to.search = 1e+05,
  culling.pairwise.k = 0.25,
  n.threads = 1,
  n.steps = 200,
  min.target.k = NULL
)

Arguments

data	data frame with possible crosses to filter out
K	relationship matrix
n.cross	number of crosses in the mating plan
max.cross	maximum number of crosses per individual in the plan
min.cross	minimum number of crosses per individual in the plan
max.cross.to.search	maximum number of rows in the input to search for the solution
culling.pairwise.k	don't allow crosses with more than this threshold of relatedness. Default is 0.25.
n.threads	number of threads to run in parallel
n.steps	number of steps in the evolution
min.target.k	if target K is lower than this threshold, the algorithm stops.

Value

A list with a data frame with the steps and a data frame with the mating plan at the last iteration

Author(s)

Rodrigo R Amadeu, [e-mail]

rramadeu/SimpleMating documentation built on Jan. 30, 2023, 7:29 p.m.