refinePlan: Devolute mating plan to reduce relatedness

In rramadeu/SimpleMating: Simple mating allocation for small breeding programs

Devolute mating plan to reduce relatedness

Description

Devolute mating plan to reduce relatedness

Usage

refinePlan(
  data,
  plan,
  K,
  n.cross = 50,
  max.cross = 4,
  min.cross = 2,
  culling.pairwise.k = 0.25,
  max.attempts = 100
)

Arguments

data	data frame with possible crosses to filter out
plan	current mating plan
K	relationship matrix
n.cross	number of crosses in the mating plan
max.cross	maximum number of crosses per individual in the plan
min.cross	minimum number of crosses per individual in the plan
culling.pairwise.k	don't allow crosses with more than this threshold of relatedness. Default is 0.25.
max.attempts	maximum number of attempts to improve the plan

Value

A list with a data frame with the attempts and a data frame with the improved mating plan

Author(s)

Rodrigo R Amadeu, [e-mail]

rramadeu/SimpleMating documentation built on Jan. 30, 2023, 7:29 p.m.