| "[",ArrayViews,ANY-method |
Man page
|
| $,ArrayViews-method |
Man page
|
| $<-,ArrayViews-method |
Man page
|
| '[',ArrayViews,ANY-method |
Man page
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| ArrayViews |
Man page
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| ArrayViews,numeric,numeric-method |
Man page
|
| ArrayViews-class |
Man page
|
| CopyNumScanParams |
Man page
|
| CopyNumScanParams-class |
Man page
|
| EMupdates |
Man page
|
| EMupdates,EmissionParam-method |
Man page
|
| EMupdates,HmmParam-method |
Man page
|
| EmissionParam |
Man page
|
| EmissionParam,missing-method |
Man page
|
| EmissionParam,numeric-method |
Man page
|
| FilterParam |
Man page
|
| FilterParam-class |
Man page
|
| HMM |
Man page
|
| HMM-class |
Man page
|
| HMMList |
Man page
|
| HMMList-class |
Man page
|
| HmmParam |
Man page
|
| HmmParam,matrix-method |
Man page
|
| HmmParam,missing-method |
Man page
|
| HmmTrellisParam |
Man page
|
| IdiogramParams |
Man page
|
| IdiogramParams-class |
Man page
|
| LogLik |
Man page
|
| LogLik-class |
Man page
|
| NA_filter |
Man page
|
| NA_filter,SnpArrayExperiment-method |
Man page
|
| NA_filter,character-method |
Man page
|
| NA_filter,list-method |
Man page
|
| NA_filter,numeric-method |
Man page
|
| NA_filter,oligoSnpSet-method |
Man page
|
| SnpArrayExperiment |
Man page
|
| SnpArrayExperiment,matrix-method |
Man page
|
| SnpArrayExperiment,missing-method |
Man page
|
| SnpArrayExperiment-class |
Man page
|
| SnpExperiment |
Man page
|
| SnpExperiment,ArrayViews-method |
Man page
|
| SnpGRanges |
Man page
|
| SnpGRanges,GRanges-method |
Man page
|
| SnpGRanges,missing-method |
Man page
|
| SnpGRanges-class |
Man page
|
| TransitionParam |
Man page
|
| TransitionParam,missing-method |
Man page
|
| TransitionParam,numeric-method |
Man page
|
| VanillaICE |
Man page
|
| VanillaICE-package |
Man page
|
| [,ArrayViews,ANY,ANY,ANY-method |
Man page
|
| acf2 |
Man page
|
| baf,ArrayViews-method |
Man page
|
| baf,SnpArrayExperiment-method |
Man page
|
| bafFile |
Man page
|
| bafFile,ArrayViews-method |
Man page
|
| baf_means |
Man page
|
| baf_means,ArrayViews-method |
Man page
|
| baf_means,EmissionParam-method |
Man page
|
| baf_means,HmmParam-method |
Man page
|
| baf_means<- |
Man page
|
| baf_means<-,EmissionParam,numeric-method |
Man page
|
| baf_sds |
Man page
|
| baf_sds,EmissionParam-method |
Man page
|
| baf_sds,HmmParam-method |
Man page
|
| baf_sds<- |
Man page
|
| baf_sds<-,EmissionParam,numeric-method |
Man page
|
| baumWelchUpdate |
Man page
|
| calculateEmission |
Man page
|
| calculateEmission,RangedSummarizedExperiment-method |
Man page
|
| calculateEmission,list-method |
Man page
|
| calculateEmission,numeric-method |
Man page
|
| cn_means |
Man page
|
| cn_means,EmissionParam-method |
Man page
|
| cn_means,HmmParam-method |
Man page
|
| cn_means<- |
Man page
|
| cn_means<-,EmissionParam,numeric-method |
Man page
|
| cn_sds |
Man page
|
| cn_sds,EmissionParam-method |
Man page
|
| cn_sds,HmmParam-method |
Man page
|
| cn_sds<- |
Man page
|
| cn_sds<-,EmissionParam,numeric-method |
Man page
|
| cnvFilter |
Man page
|
| cnvFilter,GRanges-method |
Man page
|
| cnvFilter,HMM-method |
Man page
|
| cnvFilter,HMMList-method |
Man page
|
| cnvSegs |
Man page
|
| cnvSegs,HMM-method |
Man page
|
| cnvSegs,HMMList-method |
Man page
|
| cnvSegs,HmmGRanges-method |
Man page
|
| colModes |
Man page
|
| colnames |
Man page
|
| colnames,ArrayViews-method |
Man page
|
| colnames<- |
Man page
|
| colnames<-,ArrayViews,character-method |
Man page
|
| copyNumber,SnpArrayExperiment-method |
Man page
|
| deletion |
Man page
|
| deletion,HMM-method |
Man page
|
| dim,ArrayViews-method |
Man page
|
| doUpdate |
Man page
|
| dropDuplicatedMapLocs |
Man page
|
| dropSexChrom |
Man page
|
| duplication |
Man page
|
| duplication,HMM-method |
Man page
|
| duplication,HMMList-method |
Man page
|
| emission |
Man page
|
| emission,HmmParam-method |
Man page
|
| emission<- |
Man page
|
| emission<-,HMM-method |
Man page
|
| emission<-,HmmParam-method |
Man page
|
| emissionParam |
Man page
|
| emissionParam,HMM-method |
Man page
|
| emissionParam,HmmGRanges-method |
Man page
|
| emissionParam,HmmParam-method |
Man page
|
| emissionParam<- |
Man page
|
| emissionParam<-,HmmGRanges,EmissionParam-method |
Man page
|
| emissionParam<-,HmmParam,EmissionParam-method |
Man page
|
| filters |
Man page
|
| filters,HMM-method |
Man page
|
| filters,HmmParam-method |
Man page
|
| genotypes |
Man page
|
| genotypes,ArrayViews-method |
Man page
|
| genotypes,SnpArrayExperiment-method |
Man page
|
| getExampleSnpExperiment |
Man page
|
| getHmmParams |
Man page
|
| getHmmParams,HMM-method |
Man page
|
| getHmmParams,HmmParam-method |
Man page
|
| gtFile |
Man page
|
| gtFile,ArrayViews-method |
Man page
|
| hemizygous |
Man page
|
| hemizygous,HMM-method |
Man page
|
| hemizygous,HMMList-method |
Man page
|
| hmm2 |
Man page
|
| hmm2,ArrayViews-method |
Man page
|
| hmm2,SnpArrayExperiment-method |
Man page
|
| hmm2,oligoSnpSet-method |
Man page
|
| hmmResults |
Man page
|
| homozygous |
Man page
|
| homozygous,HMM-method |
Man page
|
| homozygous,HMMList-method |
Man page
|
| isHeterozygous |
Man page
|
| isHeterozygous,ArrayViews-method |
Man page
|
| isHeterozygous,SnpArrayExperiment-method |
Man page
|
| isHeterozygous,matrix-method |
Man page
|
| isHeterozygous,numeric-method |
Man page
|
| length,LogLik-method |
Man page
|
| lrr,ArrayViews-method |
Man page
|
| lrr,SnpArrayExperiment-method |
Man page
|
| lrrFile |
Man page
|
| lrrFile,ArrayViews-method |
Man page
|
| lrrFile<- |
Man page
|
| lrrFile<-,ArrayViews-method |
Man page
|
| matrixOrNULL |
Man page
|
| matrixOrNULL-class |
Man page
|
| ncol,ArrayViews-method |
Man page
|
| ncol,HmmParam-method |
Man page
|
| nrow,ArrayViews-method |
Man page
|
| nrow,HmmParam-method |
Man page
|
| numberFeatures |
Man page
|
| numberFeatures,FilterParam-method |
Man page
|
| numberFeatures,HMM-method |
Man page
|
| numberFeatures,HmmGRanges-method |
Man page
|
| parseSourceFile |
Man page
|
| parseSourceFile,ArrayViews,CopyNumScanParams-method |
Man page
|
| parsedPath |
Man page
|
| parsedPath,ArrayViews-method |
Man page
|
| plot,IdiogramParams,ANY-method |
Man page
|
| plot,IdiogramParams-method |
Man page
|
| probability |
Man page
|
| probability,FilterParam-method |
Man page
|
| rescale |
Man page
|
| rowMAD |
Man page
|
| rowModes |
Man page
|
| sapply,ArrayViews-method |
Man page
|
| segs |
Man page
|
| segs,HMM-method |
Man page
|
| segs,HMMList-method |
Man page
|
| show,ArrayViews-method |
Man page
|
| show,CopyNumScanParams-method |
Man page
|
| show,EmissionParam-method |
Man page
|
| show,FilterParam-method |
Man page
|
| show,HMM-method |
Man page
|
| show,HMMList-method |
Man page
|
| show,HmmParam-method |
Man page
|
| show,IdiogramParams-method |
Man page
|
| show,LogLik-method |
Man page
|
| show,TransitionParam-method |
Man page
|
| show,Viterbi-method |
Man page
|
| snpArrayAssays |
Man page
|
| snp_exp |
Man page
|
| sourcePaths |
Man page
|
| sourcePaths,ArrayViews-method |
Man page
|
| start,ArrayViews-method |
Man page
|
| start,oligoSnpSet-method |
Man page
|
| state,FilterParam-method |
Man page
|
| state,HMM-method |
Man page
|
| state,HmmGRanges-method |
Man page
|
| state,Viterbi-method |
Man page
|
| state-methods |
Man page
|
| sweepMode |
Man page
|
| sweepMode,SnpArrayExperiment-method |
Man page
|
| threshold |
Man page
|
| unlist,HMMList-method |
Man page
|
| updateHmmParams |
Man page
|
| viewports |
Man page
|
| xygrid |
Man page
|
| xyplotList |
Man page
|
| xyplotList,GRangesList,SnpArrayExperiment-method |
Man page
|
| xyplotList,HmmGRanges,SnpArrayExperiment-method |
Man page
|
