HMMList-class: Class, constructor, and methods for representing HMM results...

In rscharpf/VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

Each element of the HMMList contains the genomic intervals of the HMM segmentation (GRanges-derived object), parameters from the Baum-Welch, and a FilterParam object.

Usage

## S4 method for signature 'HMMList'
show(object)

## S4 method for signature 'HMMList'
unlist(x, recursive = TRUE, use.names = TRUE)

Arguments

object	a HMMList object
x	a HMMList object
recursive	logical; currently ignored
use.names	logical; currently ignored

Slots

.Data

a list. Each element of the list should be a HMM object.

See Also

HMM

Examples

data(snp_exp)
fit <- hmm2(snp_exp)
class(fit)
identical(length(fit), ncol(snp_exp))
unlist(fit)

rscharpf/VanillaICE documentation built on May 15, 2019, 5:51 p.m.