IdiogramParam-class: Constructor for IdiogramParam objects

In rscharpf/VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

Parameters for plotting idiograms

Usage

IdiogramParams(seqnames = character(), seqlengths = numeric(),
  unit = "kb", genome = "hg19", box = list(color = "blue", lwd = 1))

## S4 method for signature 'IdiogramParams,ANY'
plot(x, y, ...)

Arguments

seqnames	length-one character vector providing chromosome name
seqlengths	length-one numeric vector indicating size of chromosome
unit	character string indicating unit for genomic position
genome	character string indicating genome build
box	a list of parameters for plotting the box around the part of the idiogram that is plotted
x	an IdiogramParam object
y	ignored
...	ignored

Value

IdiogramParam object

rscharpf/VanillaICE documentation built on May 15, 2019, 5:51 p.m.