Man pages for rscharpf/crlmmCompendium
This package contains the compendium for copy number estimation with the crlmm package
| addCentromereBreaks | Inserts breakpoints for a centromere |
| cnPanel | Lattice panel function for plotting raw copy number estimates... |
| cnPredictionPanel | Plot bivariate normal prediction regions on a lattice panel |
| exampleData1 | An object of class CNSet containing 16 randomly selected SNPS |
| genotypeSet | An object of class CNSet for 16 randomly selected SNPs in the... |
| getHapMapIds | Maps cel file names to HapMap ids |
| lmPanel | For overlaying the line from the copy number model over... |
| makeTransparent | utility function for setting transparency of colors |
| prePredictPanel | Collect A and B intensities, etc from a CNSet object into a... |
| redonSet | Copy number estimates and genotype calls for chromosome 8 of... |
| SNR | Signal to noise ratio estimated from the CRLMM algorithm. |
