auto_score: auto_score

In rsimon64/FragmanUI: User Interface for Fragman

Description

auto_score

Usage

auto_score(folder = utils::choose.dir(), ploidy = 2, min_threshold = 5000,
  x_range = c(200, 350), channels = 1:5, myladder = NULL,
  marker = "mark", quality = 0.9999, plotting = TRUE)

Arguments

folder	string path to a folder with only ABI files
ploidy	integer; default 2; not yet implemented in Fragman
min_threshold	integer, default: 5000
x_range	integer vector; default: 200:500
channels	integer vector; 1:5
myladder	integer vector: default: LIZ600 values
marker	string; a namer for the marker
quality	numeric; default: 0.9999. 1 would be highest
plotting	logical; whether to create plots or not; default: FALSE

Value

data.frame of scoring results for each file or individual. Two columns for each marker (diploid).

rsimon64/FragmanUI documentation built on May 16, 2019, 7:43 a.m.