plotFPWM: A function to plot the forked Position Weight Matrix

In rtmag/FPWM: Creation of Forked-Position Weight Matrices, a graph model of multiple PWMs.

Description

This function takes the generated class object and plots a forked position weight matrix.

Usage

plotFPWM(
  FPWM,
  Methylation = TRUE,
  height = 12,
  width = 7,
  textSize = 7,
  scaleBarplot = TRUE,
  pdfName = "plotFPWM.pdf"
)

Arguments

FPWM	is an object of S4 class with modified and converted data ready to be plotted.
Methylation	is a logical value. If it set on TRUE, Methylation level chart will also be plotted. If Flase, only sequence logos will be shown.
height	Height (inches) of the pdf output.
width	Width (inches) of the pdf output.
textSize	Size of the text on the plot default 8.
scaleBarplot	Logical value, TRUE to keep the .
pdfName	Name for the output pdf.

Value

Plots the FPWM into a PDF file.

Examples

plotFPWM(fpwm, pdfName="fpwm_plot.pdf")

rtmag/FPWM documentation built on March 23, 2020, 12:46 a.m.